I uploaded a new libapt-front_0.3.9ubuntu4 that should fix the issue. It ensures in apt-index-watcher that the main apt mmap file is not touched.
** Changed in: libapt-front (Ubuntu)
Assignee: (unassigned) => Michael Vogt
Status: Confirmed => Fix Released
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apt-index-watcher corrupts the apt cache database
https://launchpad.net/bugs/61708
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