Hmm, OK. Is something like XkbLayout "jp,jp" XkbVariant "latin," a common setup for you? The jp(latin) variant seems to match the IBM link you gave.
** Changed in: console-setup (Ubuntu)
Importance: Undecided => Medium
Status: Unconfirmed => Confirmed
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[Edgy Beta] "Japan" keyboard layout is actually "U.S. English"
https://launchpad.net/bugs/63915
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