The attached patch to apt-get fixes the problem for me. I'm a bit
worried the patch subtly breaks something but I haven't found any
problems while testing.

The code in question was added to apt in rev. 1.59 of apt-get:
http://cvs.debian.org/apt/cmdline/apt-get.cc?rev=1.156&root=deity&view=log

** Attachment added: "apt-0.7.9-fix-get-exact-source-version.patch"
   
http://launchpadlibrarian.net/12799920/apt-0.7.9-fix-get-exact-source-version.patch

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apt-get source package=version fails if binary name != source name
https://bugs.launchpad.net/bugs/202219
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