Nevermind, I just resolved my bug by removing the ~/.local/share/mime
directory.
It seems like there were entries for *.mkv files in my personnal mime
database that were masking the system one and causing this bug. I don't
know how that happened though. My guess is they were created during the
upgrade from gutsy to hardy by nautilus when dealing with a *.mkv file
when the shared-mime-info package was upgraded (and thus the system-wide
mime database was unavailable) ...
** Changed in: ubuntu
Status: New => Invalid
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Matroska video files get the wrong mime type in hardy.
https://bugs.launchpad.net/bugs/205468
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