I've also got this problem.  I'm using ubuntu 8.04 beta AMD 64, Sun JDK 1.6 
(synaptic version: 6-04-02, java version: build 1.6.0_04-b12)
Eclipse ran ok allowing me to install plugin's and check code out of svn, the 
crash occurs when it starts compiling the workspace.

** Attachment added: "Error log"
   http://launchpadlibrarian.net/12839612/hs_err_pid7558.log

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Java applications crash with Sun JDK 1.6 (6-04-2) on x86_64 
https://bugs.launchpad.net/bugs/205620
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