Now that things are working again, here are more details.
After logging in in GNOME Safe mode, then back out and in via usual login, the 
system ran fine with the display no longer inverted. However oddly the top and 
bottom desktop panels had switched places of their own accord (all had been 
right in safe mode). They would not change back, until I checked "expand" in 
properties once more. I then moved them and unchecked expand when I had 
everything where I wanted. The panels still will not move around with expand 
unchecked.
As a result of my experiences so far there would appear to be an issue with 
both inverting the display, and a minor one regarding panel movement. The 
latter could be a system wide issue but the former is clearly purely to do with 
user settings as the login screen at all times was not inverted, only after 
login. Upon reflection, whilst that itself is not a bug, is a redesign an idea? 
If someone did have a setup requiring inversion I doubt they would want to have 
to login upside down every time, which is what would happen right now even with 
no bugs present.
I have been running the system in its default configuration always up to date, 
edits have only been visual via menus. If you would like any more information 
just comment below and I'll gladly fill any gaps.

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Freeze after flipping display 180deg (8.04b)
https://bugs.launchpad.net/bugs/212308
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