I'm getting the same issue here, when I click on the green check mark it's not 
opening the panel, and when I open it in a new window, I get errors when I try 
to run javascript in the console.  Here is some output from the separate 
window, I think it has something to do with Firefox's security manager:
(showHover is some simple javascript to put a message into a div with a 
specific ID)

>>> showHover('Hello');
commandLine.evaluate FAILS: [Exception... "Security Manager vetoed action" 
nsresult: "0x80570027 (NS_ERROR_XPC_SECURITY_MANAGER_VETO)" location: "JS frame 
:: chrome://firebug/content/commandLine.js :: <TOP_LEVEL> :: line 100" data: no]
[Break on this error] undefined
>>> alert( 'hello' );
commandLine.evaluate FAILS: [Exception... "Security Manager vetoed action" 
nsresult: "0x80570027 (NS_ERROR_XPC_SECURITY_MANAGER_VETO)" location: "JS frame 
:: chrome://firebug/content/commandLine.js :: <TOP_LEVEL> :: line 100" data: no]
[Break on this error] undefined

-- 
firebug no longer works in firefox 3 beta5
https://bugs.launchpad.net/bugs/218130
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