Same here (same AMule, Hardy with latest patches):
2008-04-24 22:24:19: Logger.cpp(269): Error: Impossible to set permissions for 
the file '/media/hda1/Temp/eMule/068.part.met.backup' (error 1: Operation not 
permitted)
2008-04-24 22:24:19: Logger.cpp(269): Error: Impossible to set permissions for 
the file '/media/hda1/Temp/eMule/068.part.met.bak' (error 1: Operation not 
permitted)

I did a DSKCHK /f from a boot CD and it showed lots of errors in 'index data'.
A few times AMule also crashed without a tracem and a lot of the partfiles were 
lost (just disappeared...) :-(

-- 
flooding logs on NTFS temp directory
https://bugs.launchpad.net/bugs/213659
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