Looks like a permissions problem:
IOError: [Errno 13] Permission denied: 
'/home/username/.local/share/desktop-directories/wine-Programmes.directory'

What is the output of the following commands:
$ id
$ ls -l /home/username/.local/share/desktop-directories/

** Changed in: alacarte (Ubuntu)
     Assignee: (unassigned) => Pascal De Vuyst (pascal-devuyst)
       Status: New => Incomplete

** Summary changed:

- menu principal a quitté de facon inattendue
+ alacarte crashed with IOError in __writeMenu()

** Visibility changed to: Public

-- 
alacarte crashed with IOError in __writeMenu()
https://bugs.launchpad.net/bugs/226253
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