I have this same problem, though it definitely seems to be complicated.
Copying large files (>2GB) from one SATA drive to another, or to another
location on the same drive pretty much seems to always cause slow speeds
(and i mean like 3Mb/sec, it can take 20-30 mins to copy a 4gig file,
its seriously faster to burn the same file). Copying a say, 700MB file
between the same two drives is reasonably fast (~30mb/sec).

I have a mix of NTFS and reiserfs drives, but it doesnt seem to matter
which are the source and target drives. For what its worth, I had the
same problem in gentoo, and 32 vs 64-bit doesnt seem to matter either.
I'm fairly sure this is a kernel bug, possibly related to specific
motherboards or chipset (i'm using the onboard SATA of my nforce4
board). I dont have any of the obvious problems mentioned earlier like
disabled write cache or no DMA modes enabled, hdparm gives me a 72MB/s
reads (is there a way to test writes?).

It's frustrating to know that I have drives capable of 50+MB/sec, and
dont seem to have a problem getting those speeds in windows, and can
only get half that in linux at best. Anyone with any insight would be
much appreciated.

-- 
Slow SATA performance
https://bugs.launchpad.net/bugs/119730
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