i created a workaround based on a suggestion found in the gnome
bugtracker:

1) find out how your panels are called. its the last part of the strings you 
get if you run:
gconftool-2 --all-dirs /apps/panel/toplevels

2) run the following script. pass top/bottom/left/right and the names of
the panels as arguments. the panel mentioned first will be to the edge
of the screen.

** Attachment added: "shell-sript to reorder the panels"
   http://launchpadlibrarian.net/14700229/change_panels.sh

-- 
panels change their position between logins
https://bugs.launchpad.net/bugs/15442
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