Some suggestions regarding sun-java5 packages:

- make sure that /etc/eclipse/java_home has first line:
    /usr/lib/jvm/java-1.5.0-sun
- make sure that /etc/jvm has first line:
    /usr/lib/jvm/java-1.5.0-sun
- make sure that /etc/alternatives/java (and friends) point to:
    /usr/lib/jvm/java-1.5.0-sun/jre/bin/java
- make sure that firefox/mozilla Sun Java plugin test OK on:
    http://www.java.com/en/download/help/testvm.xml

and of course https://help.ubuntu.com/community/Java

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sun-java5-jdk should ask to set itself as the default upon installation
https://launchpad.net/bugs/59987

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