This could be related to http://bugzilla.gnome.org/show_bug.cgi?id=506557.
Anyway, it doesn't seem to be directly imputable to Oggconvert.
** Changed in: oggconvert (Ubuntu)
Status: New => Invalid
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converting wma to ogg results in a very choppy sounding audio file
https://bugs.launchpad.net/bugs/202491
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