I tried what I thought would be a variation on it, which was to set
gnome-terminal not to close when the shell exits.  I didn't see anything
for a while, then just a couple days ago I had a shell just go dead on
me, as if I had exited it.  I believe I backgrounded something just
before that, but I'm not sure.  No message in the terminal, nothing in
.xsession-errors or Xorg.0.log.  There was an emacs and another GUI
program (grace) running in the background.  I'm not sure if they were
still running.  I figured I just typed control-D accidentally, so I just
closed the gnome-terminal window.  As soon as I did that, both of the
children (emacs and grace) died with it (If I had expected this I would
have checked the other windows out first...)!  So I'm guessing that this
was the same phenomenon, and it's looking shell related.  Maybe the "set
-b"?  I associated it with emacs probably because 90% of the times I
background something it is emacs.

-- 
Intermittently, launching emacs in background exits bash
https://bugs.launchpad.net/bugs/185366
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