Here I am, I've done the test with Bootchart.
As supposed I'm not so able to understand the graphs but as I can see they're 
very different, also if I can't understand if mdadm is responsible for such a 
different behaviour. As I can see maybe isn't a mdadm issue because the 
"slowness" start very soon in the boot process and the CPU seems "crazy" after 
a few seconds. The CPU/IO ratio is very high when the 3 GiB of RAM are 
installed and more balanced when there are only 2.5 GiB.

An important thing I think I haven't explained so well is that the
slowness is *permanent*, it isn't limited to the boot phase.*All* of the
OS is slow *after* the boot process, so it's unusable in that condition.
This is why I can't leave the additional 512 MiB bank slotted in,
slowness at boot could be acceptable for me, but in the "after"
condition the OS is too slow to be usable :(

This is the best I can do for now, please tell me if you need something else 
and if there is a chance to see this bug fixed in this Ubuntu release or if I 
need to wait 'till October for the next release/kernel :(
Is the situation clearer?

** Attachment added: "bootchart logs"
   http://launchpadlibrarian.net/15832578/Bootchart.tar.gz

-- 
[Hardy] 3 GiB of RAM make linux *slow*
https://bugs.launchpad.net/bugs/245222
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