Adam: Have you tried a vanilla kernel? I just grabbed the intrepid
sources and looking at the tags that exist it should be possible to
bisect from a version of the vanilla kernel that shows the problem and
the ubuntu tagged release that works.

Just an idea but if 2.6.22 works, 2.6.24 doesn't and 2.6.26 does work
again, running bisect twice. First on 2.6.22-2.6.24 to find when the
problem arises, then from 2.6.24-2.6.26 to find the fix should really
narrow down the problem.

I'd help with this one but I don't have the hardware to test it on.

-- 
IBM T40 breaks under Hardy with 2.6.24 kernel
https://bugs.launchpad.net/bugs/209342
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