Note sure if keeping old php.ini:s thru upgrades are supported.
Anyway, the manual fix is definitely to remove "extension=mcrypt.so"
from your php.ini:s.
** Changed in: php5 (Ubuntu)
Status: Incomplete => Confirmed
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PHP Warning: Module 'mcrypt' already loaded in Unknown on line 0
https://bugs.launchpad.net/bugs/305254
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