I can also reproduce this bug in Intrepid.

Are there any work-arounds? I have tried using DBD as an alternative -
it works fine but does not support MD5 passwords and as it is a drupal
database I am trying to authenticate off I am stuck with MD5.

Is this module really deprecated? Without DBD supporting MD5 mysql users
are a bit stuck without it. My only alternative is to write my own
custom one.

-- 
gutsy does not have a working apache+mysql authentication solution
https://bugs.launchpad.net/bugs/150649
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