I'm happy you found a solution.
Just a few other information: the file system permissions problem you describe 
is caused by files owned by root and non-world-readable. Running "sudo ..." 
should allow you to access those files. The complete error line points to a 
problem with policies : Tomcat runs by default with a restrictive policy : you 
might need to add permissions to the /etc/tomcat5.5/policy.d/ directory, or 
turn off policy completely by having TOMCATn_SECURITY=no in 
/etc/default/tomcat5.5.

** Changed in: mysql-dfsg-5.0 (Ubuntu)
       Status: Incomplete => Invalid

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tomcat cannot connect to mysql
https://bugs.launchpad.net/bugs/217607
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