I can't reproduce that. Running "sudo /etc/init.d/tomcat6 stop" will
successfully shutdown tomcat6 here. Double-check that you really reload
the page and you don't hit Firefox cache. If the bug is still there,
please run:

$ sudo /etc/init.d/tomcat6 start
$ ps -ef | grep tomcat6
$ sudo /etc/init.d/tomcat6 stop
$ ps -ef | grep tomcat6
$ cat /var/run/tomcat6.pid

and post the output.

** Changed in: tomcat6 (Ubuntu)
   Importance: Undecided => Low

** Changed in: tomcat6 (Ubuntu)
       Status: New => Incomplete

-- 
tomcat6 will not shutdown in Ubuntu 10.04
https://bugs.launchpad.net/bugs/597445
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