I've verified this is still an issue with the following user-data on upstart at 
'1.8-0ubuntu1'.
This is re-creatable via the most recent daily image 
(ubuntu-raring-daily-amd64-server-20130403).  I used ami-88a4c1e1.

But you can download and recreate as above.  The user-data provided to
recreate is below.  The 'createmark' is necessary because we've disabled
the 'initctl reload' call to lessen the issue.  touching that file turns
the call back on.

#cloud-config-archive
- filename: createmark
  content: |
   #cloud-boothook
   #!/bin/sh
   touch /run/cloud-init-upstart-reload
- content: |
   #!/bin/sh
   echo "==== $(date -R): user-script run ===" | tee /run/user-script.log
- filename: myjob.conf
  content: |
   #upstart-job
   description "a test upstart job"
   start on stopped rc RUNLEVEL=[2345]
   console output
   task
   script
   echo "==== $(date -R): upstart job run ===" | tee /run/upstart-job.log
   end script
- content: |
   #cloud-config
   password: passw0rd
   chpasswd: { expire: False }
   ssh_pwauth: True

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https://bugs.launchpad.net/bugs/1124384

Title:
  reload-configuration can confuse upstart

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