This bug was fixed in the package openssh - 1:5.9p1-5ubuntu1.1

---------------
openssh (1:5.9p1-5ubuntu1.1) precise; urgency=low

  [ Gunnar Hjalmarsson ]
  * debian/openssh-server.sshd.pam: Explicitly state that ~/.pam_environment
    should be read, and move the pam_env calls from "auth" to "session" so
    that it's also read when $HOME is encrypted (LP: #952185).
 -- Colin Watson <cjwat...@ubuntu.com>   Tue, 26 Mar 2013 14:15:06 +0000

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https://bugs.launchpad.net/bugs/952185

Title:
  ~/.pam_environment not parsed by default

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