Public bug reported:

I am running Ubuntu 16.04.3 on a Macbook Pro using a dock with two
monitors. While docked, the internal display is not operational, instead
using only the two monitors. I have repeatedly encountered issues where
application windows that are active on the left display are not
selectable with the mouse. I can still use the Unity launcher bar and
the top menu bar but not any open windows. The windows on the right
monitor still work properly. If I drag applications from the right
display to the left display, that application also becomes unclickable
with the mouse. Windows that span across both display and clickable on
the right display, but not the left display. This behavior happens
occasionally (about once a week) with any running applications, and I
have not been able to cause the behavior repeatably. I can still use the
applications by using the Unity launcher to switch to the application,
then using keyboard commands. I would note that usually when this
happens, I have a Windows virtual machine running in Virtualbox. I'm not
sure if that is related or just a coincidence. At times, I can get the
OS operating correctly again by closing all open application windows.
Other times, it requires a complete reboot to restore operation to the
left side monitor.

ProblemType: Bug
DistroRelease: Ubuntu 16.04
Package: xorg 1:7.7+13ubuntu3
ProcVersionSignature: Ubuntu 4.10.0-38.42~16.04.1-generic 4.10.17
Uname: Linux 4.10.0-38-generic x86_64
NonfreeKernelModules: nvidia_modeset nvidia wl
.proc.driver.nvidia.gpus.0000.01.00.0: Error: [Errno 21] Is a directory: 
'/proc/driver/nvidia/gpus/0000:01:00.0'
.proc.driver.nvidia.registry: Binary: ""
.proc.driver.nvidia.version:
 NVRM version: NVIDIA UNIX x86_64 Kernel Module  375.66  Mon May  1 15:29:16 
PDT 2017
 GCC version:  gcc version 5.4.0 20160609 (Ubuntu 5.4.0-6ubuntu1~16.04.5)
.tmp.unity_support_test.0:
 
ApportVersion: 2.20.1-0ubuntu2.10
Architecture: amd64
BootLog:
 
CompizPlugins: No value set for 
`/apps/compiz-1/general/screen0/options/active_plugins'
CompositorRunning: compiz
CompositorUnredirectDriverBlacklist: '(nouveau|Intel).*Mesa 8.0'
CompositorUnredirectFSW: true
CurrentDesktop: Unity
Date: Wed Nov 15 11:39:50 2017
DistUpgraded: Fresh install
DistroCodename: xenial
DistroVariant: ubuntu
ExtraDebuggingInterest: Yes
GraphicsCard:
 Intel Corporation 3rd Gen Core processor Graphics Controller [8086:0166] (rev 
09) (prog-if 00 [VGA controller])
   Subsystem: Apple Inc. 3rd Gen Core processor Graphics Controller [106b:00f7]
 NVIDIA Corporation GK107M [GeForce GT 650M Mac Edition] [10de:0fd5] (rev a1) 
(prog-if 00 [VGA controller])
   Subsystem: Apple Inc. GK107M [GeForce GT 650M Mac Edition] [106b:00f2]
InstallationDate: Installed on 2016-05-04 (559 days ago)
InstallationMedia: Ubuntu 16.04 LTS "Xenial Xerus" - Release amd64 (20160420.1)
MachineType: Apple Inc. MacBookPro10,1
ProcKernelCmdLine: BOOT_IMAGE=/boot/vmlinuz-4.10.0-38-generic 
root=UUID=398390d3-f6be-4e80-8a20-f036f9ec4d26 ro net.ifnames=0 biosdevname=0 
quiet splash vt.handoff=7
SourcePackage: xorg
Symptom: display
UpgradeStatus: No upgrade log present (probably fresh install)
dmi.bios.date: 06/08/2015
dmi.bios.vendor: Apple Inc.
dmi.bios.version: MBP101.88Z.00EE.B09.1506081405
dmi.board.asset.tag: Base Board Asset Tag#
dmi.board.name: Mac-C3EC7CD22292981F
dmi.board.vendor: Apple Inc.
dmi.board.version: MacBookPro10,1
dmi.chassis.type: 10
dmi.chassis.vendor: Apple Inc.
dmi.chassis.version: Mac-C3EC7CD22292981F
dmi.modalias: 
dmi:bvnAppleInc.:bvrMBP101.88Z.00EE.B09.1506081405:bd06/08/2015:svnAppleInc.:pnMacBookPro10,1:pvr1.0:rvnAppleInc.:rnMac-C3EC7CD22292981F:rvrMacBookPro10,1:cvnAppleInc.:ct10:cvrMac-C3EC7CD22292981F:
dmi.product.name: MacBookPro10,1
dmi.product.version: 1.0
dmi.sys.vendor: Apple Inc.
version.compiz: compiz 1:0.9.12.2+16.04.20160823-0ubuntu1
version.ia32-libs: ia32-libs N/A
version.libdrm2: libdrm2 2.4.76-1~ubuntu16.04.1
version.libgl1-mesa-dri: libgl1-mesa-dri 17.0.7-0ubuntu0.16.04.2
version.libgl1-mesa-dri-experimental: libgl1-mesa-dri-experimental N/A
version.libgl1-mesa-glx: libgl1-mesa-glx 17.0.7-0ubuntu0.16.04.2
version.nvidia-graphics-drivers: nvidia-graphics-drivers-* N/A
version.xserver-xorg-core: xserver-xorg-core N/A
version.xserver-xorg-input-evdev: xserver-xorg-input-evdev N/A
version.xserver-xorg-video-ati: xserver-xorg-video-ati N/A
version.xserver-xorg-video-intel: xserver-xorg-video-intel N/A
version.xserver-xorg-video-nouveau: xserver-xorg-video-nouveau N/A
xserver.bootTime: Wed Nov 15 11:32:04 2017
xserver.configfile: /etc/X11/xorg.conf
xserver.errors:
 
xserver.logfile: /var/log/Xorg.0.log
xserver.outputs:
 
xserver.version: 2:1.19.3-1ubuntu1~16.04.4

** Affects: xorg (Ubuntu)
     Importance: Undecided
         Status: New


** Tags: amd64 apport-bug compiz-0.9 possible-manual-nvidia-install ubuntu 
xenial

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https://bugs.launchpad.net/bugs/1732513

Title:
  Unable to access windows on second display

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