Please note that xterm looks for ~/.Xdefaults-<hostname>, not
~/.Xdefaults:

ik5...@penny:~ $ strace xterm >pippo 2>&1
ik5...@penny:~ $ grep Xdefault pippo
open("/home/ik5pvx/.Xdefaults-penny", O_RDONLY) = 4

Setting "*customization: -color" in there solves this.
Another workaround is to: 
cat /etc/X11/app-defaults/XTerm-color /etc/X11/app-defaults/XTerm > ~/XTerm
and comment out the call to include XTerm at the beginning:
!#include "XTerm"

Pf

-- 
xterm background colour used to be black, now white
https://bugs.launchpad.net/bugs/421261
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which is subscribed to xterm in ubuntu.

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