Kai Schlamp wrote: > I compared both type systems (the serialized type system of the CAS with > the original type system). > It seems the problems comes from those definitions that are only present > in the serialized one: > > <typeDescription> > <name>org.pubcurator.uima.ts.PubIdentifier[]</name> > <description/> > <supertypeName>uima.cas.FSArray</supertypeName> > </typeDescription> > > So it seems that the TypeSystem2Xml produces an not 100% compatible type > system description (at least for deserialization of a CAS). > Can you think of any workarounds? Any chance to get that fixed soon? > Should I create a bug report (if it is one at all)?
Yes, this is a bug. Please open a Jira issue, we'll fix it asap. Re Tong's comments: it's odd that we have the same functionality twice, with different implementations. I have no idea how that came about. However, looking at the source code, the alternative should have exactly the same problems. --Thilo > > Regards, > Kai > > > > Kai Schlamp wrote: >> Hi Thilo, >> >> thanks for your help. >> I tried it the way you suggested. I just tested it with one type >> system. And if I use my type system description directly instead of >> the serialized/deserialized type system it works fine. >> But when I use the deserialized type system (serialized by your >> mentioned TypeSystem2Xml) to deserialize the CAS I get a >> CASAdminException. >> Below is the Exception, the original type system description, the >> serialized type description via TypeSystem2Xml, and a little >> serialized CAS test case. >> Do you have an idea why this Exception occurs? >> >> The Exception: >> CASAdminException: Can't derive from type "uima.cas.FSArray" since it >> is inheritance final. >> at >> org.apache.uima.cas.impl.TypeSystemImpl.addType(TypeSystemImpl.java:581) >> at >> org.apache.uima.util.CasCreationUtils.setupTypeSystem(CasCreationUtils.java:733) >> >> at >> org.apache.uima.util.CasCreationUtils.doCreateCas(CasCreationUtils.java:590) >> >> at >> org.apache.uima.util.CasCreationUtils.createCas(CasCreationUtils.java:352) >> >> at >> org.apache.uima.util.CasCreationUtils.createCas(CasCreationUtils.java:304) >> >> at >> org.pubcurator.uima.utils.FullCasDeserializer.deserialize(FullCasDeserializer.java:56) >> >> at >> org.pubcurator.uima.utils.FullCasDeserializerTest.testDeserialize(FullCasDeserializerTest.java:36) >> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) >> >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >> >> at java.lang.reflect.Method.invoke(Method.java:597) >> at >> org.junit.runners.model.FrameworkMethod$1.runReflectiveCall(FrameworkMethod.java:44) >> >> at >> org.junit.internal.runners.model.ReflectiveCallable.run(ReflectiveCallable.java:15) >> >> at >> org.junit.runners.model.FrameworkMethod.invokeExplosively(FrameworkMethod.java:41) >> >> at >> org.junit.internal.runners.statements.InvokeMethod.evaluate(InvokeMethod.java:20) >> >> at >> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28) >> >> at >> org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31) >> >> at >> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:73) >> >> at >> org.junit.runners.BlockJUnit4ClassRunner.runChild(BlockJUnit4ClassRunner.java:46) >> >> at org.junit.runners.ParentRunner.runChildren(ParentRunner.java:180) >> at org.junit.runners.ParentRunner.access$000(ParentRunner.java:41) >> at org.junit.runners.ParentRunner$1.evaluate(ParentRunner.java:173) >> at >> org.junit.internal.runners.statements.RunBefores.evaluate(RunBefores.java:28) >> >> at >> org.junit.internal.runners.statements.RunAfters.evaluate(RunAfters.java:31) >> >> at org.junit.runners.ParentRunner.run(ParentRunner.java:220) >> at >> org.eclipse.jdt.internal.junit4.runner.JUnit4TestReference.run(JUnit4TestReference.java:46) >> >> at >> org.eclipse.jdt.internal.junit.runner.TestExecution.run(TestExecution.java:38) >> >> at >> org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:467) >> >> at >> org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.runTests(RemoteTestRunner.java:683) >> >> at >> org.eclipse.jdt.internal.junit.runner.RemoteTestRunner.run(RemoteTestRunner.java:390) >> >> at >> org.eclipse.pde.internal.junit.runtime.RemotePluginTestRunner.main(RemotePluginTestRunner.java:62) >> >> at >> org.eclipse.pde.internal.junit.runtime.CoreTestApplication.run(CoreTestApplication.java:23) >> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) >> >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >> >> at java.lang.reflect.Method.invoke(Method.java:597) >> at >> org.eclipse.equinox.internal.app.EclipseAppContainer.callMethodWithException(EclipseAppContainer.java:574) >> >> at >> org.eclipse.equinox.internal.app.EclipseAppHandle.run(EclipseAppHandle.java:196) >> >> at >> org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.runApplication(EclipseAppLauncher.java:110) >> >> at >> org.eclipse.core.runtime.internal.adaptor.EclipseAppLauncher.start(EclipseAppLauncher.java:79) >> >> at >> org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:368) >> >> at >> org.eclipse.core.runtime.adaptor.EclipseStarter.run(EclipseStarter.java:179) >> >> at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) >> at >> sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) >> >> at >> sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) >> >> at java.lang.reflect.Method.invoke(Method.java:597) >> at org.eclipse.equinox.launcher.Main.invokeFramework(Main.java:559) >> at org.eclipse.equinox.launcher.Main.basicRun(Main.java:514) >> at org.eclipse.equinox.launcher.Main.run(Main.java:1311) >> at org.eclipse.equinox.launcher.Main.main(Main.java:1287) >> >> >> >> Orignial Type System Description: >> >> <?xml version="1.0" encoding="UTF-8"?> >> <typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier";> >> <name>PubCurator TypeSystem</name> >> <description>This is the type system that PubCurator uses for data >> representation. >> All analysis engines used in PubCurator must output this type >> system.</description> >> <version>1.0</version> >> <vendor>PubCurator</vendor> >> <types> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubAnnotation</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> <features> >> <featureDescription> >> <name>annotator</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>score</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifiers</name> >> <description/> >> <rangeTypeName>uima.cas.FSArray</rangeTypeName> >> <elementType>org.pubcurator.uima.ts.PubIdentifier</elementType> >> </featureDescription> >> <featureDescription> >> <name>spans</name> >> <description>One item for example can be devided in multiple >> spans. For example, the phrase "</description> >> <rangeTypeName>uima.cas.FSArray</rangeTypeName> >> <elementType>org.pubcurator.uima.ts.PubSpan</elementType> >> </featureDescription> >> <featureDescription> >> <name>topic</name> >> <description/> >> <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubIdentifier</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>identifierType</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifier</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubItem</name> >> <description/> >> <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubItemAssociation</name> >> <description/> >> <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName> >> <features> >> <featureDescription> >> <name>source</name> >> <description/> >> <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>destination</name> >> <description/> >> <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubAnnotator</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>analyzerId</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>delegateName</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>analyzerVersion</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>note</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubEntity</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> <features> >> <featureDescription> >> <name>annotations</name> >> <description/> >> <rangeTypeName>uima.cas.FSArray</rangeTypeName> >> <elementType>org.pubcurator.uima.ts.PubAnnotation</elementType> >> </featureDescription> >> <featureDescription> >> <name>score</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>annotator</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>subEntities</name> >> <description/> >> <rangeTypeName>uima.cas.FSArray</rangeTypeName> >> <elementType>org.pubcurator.uima.ts.PubEntity</elementType> >> </featureDescription> >> <featureDescription> >> <name>identifiers</name> >> <description/> >> <rangeTypeName>uima.cas.FSArray</rangeTypeName> >> <elementType>org.pubcurator.uima.ts.PubIdentifier</elementType> >> </featureDescription> >> <featureDescription> >> <name>topic</name> >> <description/> >> <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubProperty</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>key</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>value</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubSpan</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubTopic</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>namespace</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>name</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> </types> >> </typeSystemDescription> >> >> >> >> >> Serialized Type System Description: >> >> <?xml version="1.0" encoding="UTF-8"?> >> <typeSystemDescription xmlns="http://uima.apache.org/resourceSpecifier";> >> <types> >> <typeDescription> >> <name>uima.tcas.Annotation</name> >> <description/> >> <supertypeName>uima.cas.AnnotationBase</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>uima.tcas.DocumentAnnotation</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>language</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubAnnotation</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>annotator</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>score</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifiers</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>spans</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubSpan[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>topic</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubIdentifier</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>identifierType</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifier</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubItem</name> >> <description/> >> >> <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>annotator</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>score</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifiers</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>spans</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubSpan[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>topic</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubItemAssociation</name> >> <description/> >> >> <supertypeName>org.pubcurator.uima.ts.PubAnnotation</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>annotator</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>score</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifiers</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>spans</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubSpan[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>topic</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>source</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>destination</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubItem</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubAnnotator</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>analyzerId</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>delegateName</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>analyzerVersion</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>note</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubEntity</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>annotations</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotation[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>score</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>annotator</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubAnnotator</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>subEntities</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubEntity[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>identifiers</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubIdentifier[]</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>topic</name> >> <description/> >> >> <rangeTypeName>org.pubcurator.uima.ts.PubTopic</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubProperty</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>key</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>value</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubSpan</name> >> <description/> >> <supertypeName>uima.tcas.Annotation</supertypeName> >> <features> >> <featureDescription> >> <name>sofa</name> >> <description/> >> <rangeTypeName>uima.cas.Sofa</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>begin</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>end</name> >> <description/> >> <rangeTypeName>uima.cas.Integer</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubTopic</name> >> <description/> >> <supertypeName>uima.cas.TOP</supertypeName> >> <features> >> <featureDescription> >> <name>namespace</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> <featureDescription> >> <name>name</name> >> <description/> >> <rangeTypeName>uima.cas.String</rangeTypeName> >> </featureDescription> >> </features> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubIdentifier[]</name> >> <description/> >> <supertypeName>uima.cas.FSArray</supertypeName> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubSpan[]</name> >> <description/> >> <supertypeName>uima.cas.FSArray</supertypeName> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubAnnotation[]</name> >> <description/> >> <supertypeName>uima.cas.FSArray</supertypeName> >> </typeDescription> >> <typeDescription> >> <name>org.pubcurator.uima.ts.PubEntity[]</name> >> <description/> >> <supertypeName>uima.cas.FSArray</supertypeName> >> </typeDescription> >> </types> >> </typeSystemDescription> >> >> >> >> >> >> Serialized CAS: >> >> <?xml version="1.0" encoding="UTF-8"?><xmi:XMI >> xmlns:cas="http:///uima/cas.ecore"; xmlns:xmi="http://www.omg.org/XMI"; >> xmlns:ts="http:///org/pubcurator/uima/ts.ecore"; >> xmlns:tcas="http:///uima/tcas.ecore"; xmi:version="2.0"><cas:NULL >> xmi:id="0"/><cas:Sofa xmi:id="10" sofaNum="1" >> sofaID="_InitialView"/><ts:PubAnnotation xmi:id="1" sofa="10" >> begin="10" end="20" score="1000"/><cas:View sofa="10" >> members="1"/></xmi:XMI> >> >>
