Okay, got a useful log message:

application-click-com.example.lp1245677_lp1245677_0.1.log:**
(process:28517): WARNING **: Unable to exec 'echo Error' in
'/opt/click.ubuntu.com/.click/users/phablet/com.example.lp1245677':
Permission denied

Looks like APP_EXEC is not getting set before the job ends.

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You received this bug notification because you are a member of Unity API
bugs, which is subscribed to Upstart Application Launcher.
https://bugs.launchpad.net/bugs/1275017

Title:
  Unable to exec: Permission denied while starting applications

Status in Upstart Application Launcher:
  New
Status in “upstart-app-launch” package in Ubuntu:
  Fix Released

Bug description:
  Please note that it's not entirely clear if this is an upstart-app-
  launch bug. It's our first lead. This bug causes random failures (very
  rarely) in security autopilot tests.

  As seen in the smoketesting results:
  
http://ci.ubuntu.com/smokeng/trusty/touch/mako/156:20140131:20140115.1/6364/security/719045/

  I was able to reproduce the same test failure but on random click apps when 
running the test on my local mako machine.
  Some logs:
  http://paste.ubuntu.com/6850227/ - the DEBUG output from upstart for the 
failing application

  The same problem seems to cause many application autopilot tests
  failing as well - it seems that upstart-app-launch cannot lunch
  applications sometimes. Reverting upstart-app-launch and running
  autopilot test suites results in everything passing, while there are
  random failures with the latest upstart-app-launch installed.

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