blab_blab's suggestion...
sudo apt-get install default-jre gcj-4.4-jre gcj-jre openjdk-6-jre
...worked perfectly for me in ubuntu 9.10.
** Changed in: imagej (Ubuntu)
Status: New => Confirmed
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ImageJ fails to run - /usr/share/imagej/jni/*: No such file or directory
https://bugs.launchpad.net/bugs/471127
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