org.jasig.portal.io.threadPool.maxThreads=20
To: org.jasig.portal.io.threadPool.maxThreads=1 On 9/1/11 8:12 AM, Fabrice Marchon wrote:
Hi, I'm experiencing some problems when using MySQL as database for uPortal v4 (both tags 4RC2 and 4.0.0) construction. I have run the steps specified on the MySQL configuration page (https://wiki.jasig.org/display/UPM40/MySQL). Everything goes fine for the "ant dbtest" target until I try the "ant initdb" or "ant initportal" one ; a superb "deadlock" error arises when making a prepared statement into the UP_USER table. Do you have an idea?? Environnement: - RHEL 6.1 64 bits, MySQL 5.1.52 , mysql-connector-java 5.1.17 Regards, Fabrice Marchon Here is the stacktrace: [java] INFO Importing Data from: /home/tomcat5/uportal/uportal4/uPortal/uportal-war/src/main/data/required_entities [java] INFO Initializing ExecutorService 'importExportThreadPool' [java] INFO Adding destruction callback singleton for bean 'scopedTarget.sessionAttributesOverridesMap' [java] WARN Invalid JavaBean property 'userNames' being accessed! Ambiguous write methods found next to actually used [public void org.jasig.portal.io.PropertiesFilesIsIncludedUser.setUserNames(java.util.Map)]: [public void org.jasig.portal.io.PropertiesFilesIsIncludedUser.setUserNames(java.util.Set)] [java] INFO Scanning for files to Import from: /home/tomcat5/uportal/uportal4/uPortal/uportal-war/src/main/data/required_entities [java] INFO Found 17 files to Import from: /home/tomcat5/uportal/uportal4/uPortal/uportal-war/src/main/data/required_entities [java] INFO Importing 7 files of type<entity-type script="classpath://org/jasig/portal/io/import-entity-type_v3-2.crn"> [java] INFO Looking up bean 'counterStore' in ApplicationContext due to context not yet being initialized [java] INFO Imported : entity-type/org.jasig.portal.services.entityproperties.EntityProperties.entity-type.xml [java] INFO Imported : entity-type/org.jasig.portal.portlet.om.IPortletDefinition.entity-type.xml [java] INFO Imported : entity-type/org.jasig.portal.groups.IEntity.entity-type.xml [java] INFO Imported : entity-type/java.lang.Object.entity-type.xml [java] INFO Imported : entity-type/org.jasig.portal.security.IPermissionSet.entity-type.xml [java] INFO Imported : entity-type/org.jasig.portal.security.IPerson.entity-type.xml [java] INFO Imported : entity-type/org.jasig.portal.groups.IEntityGroup.entity-type.xml [java] INFO Importing 2 files of type <{https://source.jasig.org/schemas/uportal/io/stylesheet-descriptor}stylesheet-descriptor version="4.0"> [java] INFO Imported : stylesheet-descriptor/DLMXHTML.stylesheet-descriptor.xml [java] INFO Imported : stylesheet-descriptor/DLMTabsColumns.stylesheet-descriptor.xml [java] INFO Importing 1 files of type <{https://source.jasig.org/schemas/uportal/io/user}template-user version="4.0"> [java] INFO Imported : user/defaultTemplateUser.user.xml [java] INFO Importing 2 files of type <{https://source.jasig.org/schemas/uportal/io/user}user version="4.0"> [java] ERROR Exception while importing file [/home/tomcat5/uportal/uportal4/uPortal/uportal-war/src/main/data/required_entities/user/system.user.xml] [java] java.util.concurrent.ExecutionException: org.springframework.dao.DeadlockLoserDataAccessException: PreparedStatementCallback; SQL [INSERT INTO UP_USER(USER_ID, USER_DFLT_USR_ID, USER_DFLT_LAY_ID, NEXT_STRUCT_ID, USER_NAME) [java] VALUES(?, ?, 1, ?, ?)]; Deadlock found when trying to get lock; try restarting transaction; nested exception is com.mysql.jdbc.exceptions.MySQLTransactionRollbackException: Deadlock found when trying to get lock; try restarting transaction [java] at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222) [java] at java.util.concurrent.FutureTask.get(FutureTask.java:83) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.waitForFutures(JaxbPortalDataHandlerService.java:812) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.importData(JaxbPortalDataHandlerService.java:402) [java] at org.jasig.portal.io.xml.IPortalDataHandlerService$importData.call(Unknown Source) [java] at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42) [java] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108) [java] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:124) [java] at upshell_35149373.run(upshell_35149373.groovy:67) [java] at groovy.lang.GroovyShell.runScriptOrMainOrTestOrRunnable(GroovyShell.java:266) [java] at groovy.lang.GroovyShell.run(GroovyShell.java:229) [java] at org.jasig.portal.shell.PortalShell.main(PortalShell.java:84) [java] Caused by: org.springframework.dao.DeadlockLoserDataAccessException: PreparedStatementCallback; SQL [INSERT INTO UP_USER(USER_ID, USER_DFLT_USR_ID, USER_DFLT_LAY_ID, NEXT_STRUCT_ID, USER_NAME) [java] VALUES(?, ?, 1, ?, ?)]; Deadlock found when trying to get lock; try restarting transaction; nested exception is com.mysql.jdbc.exceptions.MySQLTransactionRollbackException: Deadlock found when trying to get lock; try restarting transaction [java] at org.springframework.jdbc.support.SQLErrorCodeSQLExceptionTranslator.doTranslate(SQLErrorCodeSQLExceptionTranslator.java:265) [java] at org.springframework.jdbc.support.AbstractFallbackSQLExceptionTranslator.translate(AbstractFallbackSQLExceptionTranslator.java:72) [java] at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:602) [java] at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:811) [java] at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:867) [java] at org.springframework.jdbc.core.JdbcTemplate.update(JdbcTemplate.java:875) [java] at org.jasig.portal.io.xml.user.UserImporterExporter.importData(UserImporterExporter.java:157) [java] at org.jasig.portal.io.xml.user.UserImporterExporter.importData(UserImporterExporter.java:60) [java] at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) [java] at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) [java] at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) [java] at java.lang.reflect.Method.invoke(Method.java:597) [java] at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:309) [java] at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183) [java] at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150) [java] at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:110) [java] at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172) [java] at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202) [java] at $Proxy100.importData(Unknown Source) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.importOrUpgradeData(JaxbPortalDataHandlerService.java:517) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.importData(JaxbPortalDataHandlerService.java:480) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.importData(JaxbPortalDataHandlerService.java:447) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService$1.call(JaxbPortalDataHandlerService.java:370) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService$ErrorReportingCallable.call(JaxbPortalDataHandlerService.java:885) [java] at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) [java] at java.util.concurrent.FutureTask.run(FutureTask.java:138) [java] at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886) [java] at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908) [java] at java.lang.Thread.run(Thread.java:662) [java] Caused by: com.mysql.jdbc.exceptions.MySQLTransactionRollbackException: Deadlock found when trying to get lock; try restarting transaction [java] at com.mysql.jdbc.SQLError.createSQLException(SQLError.java:941) [java] at com.mysql.jdbc.MysqlIO.checkErrorPacket(MysqlIO.java:2985) [java] at com.mysql.jdbc.MysqlIO.sendCommand(MysqlIO.java:1631) [java] at com.mysql.jdbc.MysqlIO.sqlQueryDirect(MysqlIO.java:1723) [java] at com.mysql.jdbc.Connection.execSQL(Connection.java:3283) [java] at com.mysql.jdbc.PreparedStatement.executeInternal(PreparedStatement.java:1332) [java] at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:1604) [java] at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:1519) [java] at com.mysql.jdbc.PreparedStatement.executeUpdate(PreparedStatement.java:1504) [java] at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105) [java] at org.apache.commons.dbcp.DelegatingPreparedStatement.executeUpdate(DelegatingPreparedStatement.java:105) [java] at org.springframework.jdbc.core.JdbcTemplate$2.doInPreparedStatement(JdbcTemplate.java:817) [java] at org.springframework.jdbc.core.JdbcTemplate$2.doInPreparedStatement(JdbcTemplate.java:1) [java] at org.springframework.jdbc.core.JdbcTemplate.execute(JdbcTemplate.java:586) [java] ... 26 more [java] INFO Imported : user/guest.user.xml [java] Exception in thread "main" java.lang.RuntimeException: data-import for /home/tomcat5/uportal/uportal4/uPortal/uportal-war/src/main/data/required_entities and null failed [java] at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) [java] at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) [java] at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) [java] at java.lang.reflect.Constructor.newInstance(Constructor.java:513) [java] at org.codehaus.groovy.reflection.CachedConstructor.invoke(CachedConstructor.java:77) [java] at org.codehaus.groovy.runtime.callsite.ConstructorSite$ConstructorSiteNoUnwrapNoCoerce.callConstructor(ConstructorSite.java:102) [java] at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCallConstructor(CallSiteArray.java:54) [java] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:182) [java] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.callConstructor(AbstractCallSite.java:194) [java] at upshell_35149373.run(upshell_35149373.groovy:70) [java] at groovy.lang.GroovyShell.runScriptOrMainOrTestOrRunnable(GroovyShell.java:266) [java] at groovy.lang.GroovyShell.run(GroovyShell.java:229) [java] at org.jasig.portal.shell.PortalShell.main(PortalShell.java:84) [java] Caused by: java.lang.RuntimeException: Halted due to 1 failures, see previous exceptions for causes. [java] file [/home/tomcat5/uportal/uportal4/uPortal/uportal-war/src/main/data/required_entities/user/system.user.xml] [java] [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.waitForFutures(JaxbPortalDataHandlerService.java:859) [java] at org.jasig.portal.io.xml.JaxbPortalDataHandlerService.importData(JaxbPortalDataHandlerService.java:402) [java] at org.jasig.portal.io.xml.IPortalDataHandlerService$importData.call(Unknown Source) [java] at org.codehaus.groovy.runtime.callsite.CallSiteArray.defaultCall(CallSiteArray.java:42) [java] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:108) [java] at org.codehaus.groovy.runtime.callsite.AbstractCallSite.call(AbstractCallSite.java:124) [java] at upshell_35149373.run(upshell_35149373.groovy:67) [java] ... 3 more [java] INFO Shutting down ExecutorService 'importExportThreadPool'
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