Okay, thank you for your response. With Regards, Vibhatha Abeykoon
On Fri, May 1, 2020 at 5:17 PM Sutou Kouhei <[email protected]> wrote: > Hi, > > > I used these settings, I still want the libs to be in a custom directory, > > not in lib/ > > Why? We don't recommend it if you don't a CMake expert. > > You can't do this if you use ARROW_HOME environment > variable. > > You may able to do this by removing ARROW_HOME environment > variable and adding > > PYARROW_CMAKE_OPTIONS="-DCMAKE_MODULE_PATH=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/dist/lib/cmake/arrow" > environment variable or something. > > > Thanks, > -- > kou > > In <CABC-QTmsekZwjWG4X=awrfqzgyi+qldyec_kvbn2njgtwjl...@mail.gmail.com> > "Re: PyArrow building from source issue" on Fri, 1 May 2020 15:05:51 > -0400, > Vibhatha Abeykoon <[email protected]> wrote: > > > export ARROW_HOME=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/dist > > export LD_LIBRARY_PATH=$ARROW_HOME/lib:$LD_LIBRARY_PATH > > > > export PYARROW_WITH_PARQUET=1 > > export PYARROW_WITH_PYTHON=1 > > export PYARROW_WITH_BUILD_TESTS=1 > > > > cmake -DCMAKE_INSTALL_PREFIX=$ARROW_HOME \ > > > > > -DCMAKE_INSTALL_LIBDIR=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs > > \ > > -DARROW_WITH_BZ2=OFF \ > > -DARROW_WITH_ZLIB=OFF \ > > -DARROW_WITH_ZSTD=OFF \ > > -DARROW_WITH_LZ4=OFF \ > > -DARROW_WITH_SNAPPY=OFF \ > > -DARROW_WITH_BROTLI=OFF \ > > -DARROW_PARQUET=ON \ > > -DARROW_PYTHON=ON \ > > -DARROW_BUILD_TESTS=ON \ > > > > > -DPYTHON_EXECUTABLE=/home/vibhatha/sandbox/arrow/repos/arrow/ENVARROW/bin/python3 > > \ > > .. > > > > > > I used these settings, I still want the libs to be in a custom directory, > > not in lib/ > > > > Does it make things not work? > > > > Now I get the following error, > > > > python setup.py build_ext --inplace > > WARNING: The wheel package is not available. > > running build_ext > > -- Running cmake for pyarrow > > cmake > -DPYTHON_EXECUTABLE=/home/vibhatha/sandbox/arrow/ENVARROW/bin/python > > -DPYARROW_BUILD_CUDA=off -DPYARROW_BUILD_FLIGHT=off > > -DPYARROW_BUILD_GANDIVA=off -DPYARROW_BUILD_DATASET=off > > -DPYARROW_BUILD_ORC=off -DPYARROW_BUILD_PARQUET=on > > -DPYARROW_BUILD_PLASMA=off -DPYARROW_BUILD_S3=off > -DPYARROW_BUILD_HDFS=off > > -DPYARROW_USE_TENSORFLOW=off -DPYARROW_BUNDLE_ARROW_CPP=off > > -DPYARROW_BUNDLE_BOOST=off -DPYARROW_GENERATE_COVERAGE=off > > -DPYARROW_BOOST_USE_SHARED=on -DPYARROW_PARQUET_USE_SHARED=on > > -DCMAKE_BUILD_TYPE=release > /home/vibhatha/sandbox/arrow/repos/arrow/python > > -- System processor: x86_64 > > -- Arrow build warning level: PRODUCTION > > Using ld linker > > Configured for RELEASE build (set with cmake > > -DCMAKE_BUILD_TYPE={release,debug,...}) > > -- Build Type: RELEASE > > -- Build output directory: > > > /home/vibhatha/sandbox/arrow/repos/arrow/python/build/temp.linux-x86_64-3.8/release > > -- Arrow version: 0.18.0 (HOME: > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/dist) > > -- Arrow SO and ABI version: 18 > > -- Arrow full SO version: 18.0.0 > > -- Found the Arrow core shared library: > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow.so > > -- Found the Arrow core import library: > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow.so > > -- Found the Arrow core static library: > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow.a > > -- Found the Arrow Python by HOME: > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/dist > > -- Found the Arrow Python shared library: > > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow_python.so > > -- Found the Arrow Python import library: > > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow_python.so > > -- Found the Arrow Python static library: > > > /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow_python.a > > CMake Error at > > > /usr/local/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 > > (message): > > Could NOT find Parquet (missing: PARQUET_LIB_DIR) (found version > "1.5.1") > > Call Stack (most recent call first): > > > > > /usr/local/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 > > (_FPHSA_FAILURE_MESSAGE) > > cmake_modules/FindParquet.cmake:116 (find_package_handle_standard_args) > > CMakeLists.txt:426 (find_package) > > > > Does Parquet need to be installed separately? > > > > With Regards, > > Vibhatha Abeykoon, > > Research Assistant, > > Intelligent Systems Engineering, > > Indiana University Bloomington, > > Cell : +1-812-955-1394 > > Web: https://www.vibhatha.org > > <https://www.linkedin.com/in/vibhathaabeykoon/> > > > > > > On Fri, May 1, 2020 at 1:55 PM Wes McKinney <[email protected]> wrote: > > > >> Try this instead > >> > >> export ARROW_HOME=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/dist > >> export LD_LIBRARY_PATH=$ARROW_HOME/lib:$LD_LIBRARY_PATH > >> > >> Make sure to use > >> > >> -DCMAKE_INSTALL_PREFIX=$ARROW_HOME -DCMAKE_INSTALL_LIBDIR=lib > >> > >> I renamed from "arrowmylibs" to "dist" so that it's less confusing > >> what that directory represents (it doesn't contains the libs > >> directory, but rather the directories include/, lib/, etc.) > >> > >> > >> On Fri, May 1, 2020 at 12:51 PM Vibhatha Abeykoon <[email protected]> > >> wrote: > >> > > >> > I didn't clearly mention the config I used, > >> > > >> > export > >> ARROW_HOME=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs > >> > export LD_LIBRARY_PATH=$ARROW_HOME:$LD_LIBRARY_PATH > >> > > >> > Before starting I added these ENV vars. > >> > > >> > My objective is to get all the libs inside my build setting. I use > arrow > >> as one of the core libraries in my project. > >> > I have to build it in the following way, > >> > > >> > 1. Arrow clone from git > >> > 2. Arrow CPP built > >> > 3. Using arrow CPP I develop custom functions upon loaded data > >> > 4. Integrate Cython APIs for these custom functions > >> > 5. Use Pyarrow Cython to provide more functionality from Python end to > >> Cython to my CPP lib which uses Arrow. > >> > > >> > This is the build that I am trying to formulate. So I have to keep > those > >> libs there, and the idea is to build python from > >> > the same cloned source. The challenge was to keep all the shared libs > >> from arrow, my-cython libs to point in the right > >> > direction. Is this a clear description? > >> > > >> > With Regards, > >> > Vibhatha Abeykoon, > >> > Research Assistant, > >> > Intelligent Systems Engineering, > >> > Indiana University Bloomington, > >> > Cell : +1-812-955-1394 > >> > Web: https://www.vibhatha.org > >> > > >> > > >> > > >> > On Fri, May 1, 2020 at 1:28 PM Wes McKinney <[email protected]> > wrote: > >> >> > >> >> This part doesn't look correct > >> >> > >> >> -DCMAKE_INSTALL_PREFIX=$ARROW_HOME \ > >> >> > >> > -DCMAKE_INSTALL_LIBDIR=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs > >> >> > >> >> The usual incantation is > >> >> > >> >> -DCMAKE_INSTALL_PREFIX=$ARROW_HOME \ > >> >> -DCMAKE_INSTALL_LIBDIR=lib > >> >> > >> >> The reason we pass -DCMAKE_INSTALL_LIBDIR=lib is that some systems > >> >> will install libraries in lib32 or lib64 instead of just lib > >> >> > >> >> > >> >> On Fri, May 1, 2020 at 10:38 AM Vibhatha Abeykoon < > [email protected]> > >> wrote: > >> >> > > >> >> > Hi Neal, > >> >> > > >> >> > Yes, I added the flag. But I installed my libs not to /usr/lib, but > >> to a different folder. > >> >> > > >> >> > This is the way I built arrow C++, > >> >> > > >> >> > cmake -DCMAKE_INSTALL_PREFIX=$ARROW_HOME \ > >> >> > > >> > -DCMAKE_INSTALL_LIBDIR=/home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs > >> \ > >> >> > -DARROW_WITH_BZ2=OFF \ > >> >> > -DARROW_WITH_ZLIB=OFF \ > >> >> > -DARROW_WITH_ZSTD=OFF \ > >> >> > -DARROW_WITH_LZ4=OFF \ > >> >> > -DARROW_WITH_SNAPPY=OFF \ > >> >> > -DARROW_WITH_BROTLI=OFF \ > >> >> > -DARROW_PARQUET=ON \ > >> >> > -DARROW_PYTHON=ON \ > >> >> > -DARROW_BUILD_TESTS=ON \ > >> >> > > >> > -DPYTHON_EXECUTABLE=/home/vibhatha/sandbox/arrow/repos/arrow/ENVARROW/bin/python3 > >> \ > >> >> > .. > >> >> > > >> >> > > >> >> > > >> >> > > >> >> > With Regards, > >> >> > Vibhatha Abeykoon, > >> >> > Research Assistant, > >> >> > Intelligent Systems Engineering, > >> >> > Indiana University Bloomington, > >> >> > Cell : +1-812-955-1394 > >> >> > Web: https://www.vibhatha.org > >> >> > > >> >> > > >> >> > > >> >> > On Fri, May 1, 2020 at 11:29 AM Neal Richardson < > >> [email protected]> wrote: > >> >> >> > >> >> >> Hi Vibhatha, > >> >> >> Did you build Arrow C++ with -DARROW_PYTHON=ON? > >> >> >> > >> >> >> Neal > >> >> >> > >> >> >> On Fri, May 1, 2020 at 8:24 AM Vibhatha Abeykoon < > [email protected]> > >> wrote: > >> >> >>> > >> >> >>> Hi, > >> >> >>> > >> >> >>> I am trying to integrate Arrow with an application that I am > >> developing. Here I build Arrow from the source (CPP) and use the API to > >> develop some custom functions to do a scientific calculation after data > >> loaded with Arrow table API. On top of this, I develop a Cython API to > >> design a python API. > >> >> >>> > >> >> >>> In the current stage, I have a new necessity where I need to > >> consume Arrow Cython API for my code. > >> >> >>> > >> >> >>> Here It was hard to link the build libarrow.so.16 with the > >> libarrow_python.so.16 from the installed pyarrow (separately from pip). > >> What I realised was everything has to be built from the same source, so > >> that I can install pyarrow from the source in my virtual environment. > >> >> >>> > >> >> >>> Before going through deeper things, I started by just building > from > >> source (CPP) and then moving towards installing pyarrow from the source. > >> >> >>> > >> >> >>> I tried to follow the guideline form here, > >> >> >>> > >> >> >>> https://arrow.apache.org/docs/developers/python.html, > >> >> >>> > >> >> >>> But when I found issues in the python build, I followed this > source, > >> >> >>> (but still, I used the clone from the master, not a released > >> version) > >> >> >>> > >> >> >>> > https://gist.github.com/heavyinfo/04e1326bb9bed9cecb19c2d603c8d521 > >> >> >>> > >> >> >>> My environmental variables are as follows, > >> >> >>> > >> >> >>> python3 setup.py build_ext --inplace > >> >> >>> running build_ext > >> >> >>> -- Running cmake for pyarrow > >> >> >>> cmake > >> > -DPYTHON_EXECUTABLE=/home/vibhatha/sandbox/arrow/repos/arrow/ENVARROW/bin/python3 > >> -DPYARROW_BUILD_CUDA=off -DPYARROW_BUILD_FLIGHT=off > >> -DPYARROW_BUILD_GANDIVA=off -DPYARROW_BUILD_DATASET=off > >> -DPYARROW_BUILD_ORC=off -DPYARROW_BUILD_PARQUET=on > >> -DPYARROW_BUILD_PLASMA=off -DPYARROW_BUILD_S3=off > -DPYARROW_BUILD_HDFS=off > >> -DPYARROW_USE_TENSORFLOW=off -DPYARROW_BUNDLE_ARROW_CPP=off > >> -DPYARROW_BUNDLE_BOOST=off -DPYARROW_GENERATE_COVERAGE=off > >> -DPYARROW_BOOST_USE_SHARED=on -DPYARROW_PARQUET_USE_SHARED=on > >> -DCMAKE_BUILD_TYPE=release > /home/vibhatha/sandbox/arrow/repos/arrow/python > >> >> >>> -- System processor: x86_64 > >> >> >>> -- Arrow build warning level: PRODUCTION > >> >> >>> Using ld linker > >> >> >>> Configured for RELEASE build (set with cmake > >> -DCMAKE_BUILD_TYPE={release,debug,...}) > >> >> >>> -- Build Type: RELEASE > >> >> >>> -- Build output directory: > >> > /home/vibhatha/sandbox/arrow/repos/arrow/python/build/temp.linux-x86_64-3.8/release > >> >> >>> -- Arrow version: 0.18.0 (HOME: > >> /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs) > >> >> >>> -- Arrow SO and ABI version: 18 > >> >> >>> -- Arrow full SO version: 18.0.0 > >> >> >>> -- Found the Arrow core shared library: > >> /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow.so > >> >> >>> -- Found the Arrow core import library: > >> /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow.so > >> >> >>> -- Found the Arrow core static library: > >> /home/vibhatha/sandbox/arrow/repos/arrow/cpp/arrowmylibs/libarrow.a > >> >> >>> CMake Error at > >> > /usr/local/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 > >> (message): > >> >> >>> Could NOT find ArrowPython (missing: ARROW_PYTHON_INCLUDE_DIR) > >> (found > >> >> >>> version "0.18.0") > >> >> >>> Call Stack (most recent call first): > >> >> >>> > >> > /usr/local/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 > >> (_FPHSA_FAILURE_MESSAGE) > >> >> >>> cmake_modules/FindArrowPython.cmake:76 > >> (find_package_handle_standard_args) > >> >> >>> CMakeLists.txt:210 (find_package) > >> >> >>> > >> >> >>> > >> >> >>> -- Configuring incomplete, errors occurred! > >> >> >>> See also > >> > "/home/vibhatha/sandbox/arrow/repos/arrow/python/build/temp.linux-x86_64-3.8/CMakeFiles/CMakeOutput.log". > >> >> >>> error: command 'cmake' failed with exit status 1 > >> >> >>> > >> >> >>> Maybe I am missing some step and I am not quite sure what is the > >> issue. > >> >> >>> > >> >> >>> Any pointers to solve this issue? > >> >> >>> > >> >> >>> With Regards, > >> >> >>> Vibhatha > >> >> >>> > >> >> >>> > >> >
