GitHub user arnaud-feldmann edited a discussion: Building arrow for webR
Hi, As I've seen that arrow can be used with pyodide, I tried to build it for webR within a mini-cran repo : https://github.com/arnaud-feldmann/build_rwasm_repo/tree/20e01e9cac3970d2634593daa95f8f4c5f7890e1 I followed the emscripten compilation here https://arrow.apache.org/docs/developers/cpp/emscripten.html to provide the webr docker image with arrow, and then I compiled the arrow packages. During the compilation, everything seems to be ok and everything seems to be static linked with emscripten : ``` *** Trying Arrow C++ found by pkg-config: /opt/emsdk/upstream/emscripten/cache/sysroot **** C++ library version 23.0.0 is supported by R version 23.0.0 PKG_CFLAGS=-I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON PKG_LIBS=-L/opt/emsdk/upstream/emscripten/cache/sysroot/lib -larrow_substrait -larrow_dataset -larrow_acero -larrow_compute -lparquet -larrow -larrow_bundled_dependencies ** libs using C++ compiler: 'emcc (Emscripten gcc/clang-like replacement + linker emulating GNU ld) 4.0.8 (70404efec4458b60b953bc8f1529f2fa112cdfd1)' using C++20 em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c RTasks.cpp -o RTasks.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c altrep.cpp -o altrep.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c array.cpp -o array.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c array_to_vector.cpp -o array_to_vector.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c arraydata.cpp -o arraydata.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c arrowExports.cpp -o arrowExports.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c bridge.cpp -o bridge.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c buffer.cpp -o buffer.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c chunkedarray.cpp -o chunkedarray.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c compression.cpp -o compression.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c compute-exec.cpp -o compute-exec.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c compute.cpp -o compute.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c config.cpp -o config.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c csv.cpp -o csv.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c dataset.cpp -o dataset.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c datatype.cpp -o datatype.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c expression.cpp -o expression.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include 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-DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c field.cpp -o field.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c filesystem.cpp -o filesystem.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c io.cpp -o io.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c json.cpp -o json.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c memorypool.cpp -o memorypool.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c message.cpp -o message.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c parquet.cpp -o parquet.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c r_to_arrow.cpp -o r_to_arrow.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c recordbatch.cpp -o recordbatch.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c recordbatchreader.cpp -o recordbatchreader.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c recordbatchwriter.cpp -o recordbatchwriter.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c safe-call-into-r-impl.cpp -o safe-call-into-r-impl.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c scalar.cpp -o scalar.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c schema.cpp -o schema.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c symbols.cpp -o symbols.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c table.cpp -o table.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c threadpool.cpp -o threadpool.o em++ -std=gnu++20 -DNDEBUG -I/opt/emsdk/upstream/emscripten/cache/sysroot/include -DARROW_ENGINE_STATIC -DARROW_DS_STATIC -DARROW_ACERO_STATIC -DARROW_COMPUTE_STATIC -DPARQUET_STATIC -DARROW_STATIC -DARROW_R_WITH_PARQUET -DARROW_R_WITH_COMPUTE -DARROW_R_WITH_DATASET -DARROW_R_WITH_ACERO -DARROW_R_WITH_SUBSTRAIT -DARROW_R_WITH_JSON -I'/root/R/x86_64-pc-linux-gnu-library/4.5/cpp11/include' -I/opt/webr/wasm/include -I/opt/webr/R/build/R-4.5.1/build/include -I/opt/webr/R/build/R-4.5.1/src/include -s USE_BZIP2=1 -s USE_ZLIB=1 -fpic -std=gnu++20 -Oz -fPIC -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -DRCPP_DEMANGLER_ENABLED=0 -D__STRICT_ANSI__ -c type_infer.cpp -o type_infer.o em++ -std=gnu++20 -s SIDE_MODULE=1 -s WASM_BIGINT -s ASSERTIONS=1 -L/opt/webr/wasm/lib -L/opt/webr/wasm/R-4.5.1/lib/R/lib -s USE_BZIP2=1 -s USE_ZLIB=1 -fwasm-exceptions -s SUPPORT_LONGJMP=wasm -Oz -o arrow.so RTasks.o altrep.o array.o array_to_vector.o arraydata.o arrowExports.o bridge.o buffer.o chunkedarray.o compression.o compute-exec.o compute.o config.o csv.o dataset.o datatype.o expression.o extension-impl.o feather.o field.o filesystem.o io.o json.o memorypool.o message.o parquet.o r_to_arrow.o recordbatch.o recordbatchreader.o recordbatchwriter.o safe-call-into-r-impl.o scalar.o schema.o symbols.o table.o threadpool.o type_infer.o -L/opt/emsdk/upstream/emscripten/cache/sysroot/lib -larrow_substrait -larrow_dataset -larrow_acero -larrow_compute -lparquet -larrow -larrow_bundled_dependencies installing to /tmp/RtmpodX2I9/file16cf61c2f/arrow/libs ** R ** inst ** preparing package for lazy loading ** help *** installing help indices ** building package indices * creating tarball packaged installation of 'arrow' as 'arrow_23.0.0_R_x86_64-pc-linux-gnu.tar.gz' * DONE (arrow) Packaging: arrow_23.0.0.data ``` However, the package loading fails at runtime. After `library(arrow)` within webR I've got ``` Error in unknown source: package or namespace load failed for ‘arrow’ in dyn.load(file, DLLpath = DLLpath, ...): unable to load shared object '/usr/lib/R/library/arrow/libs/arrow.so': Could not load dynamic lib: /usr/lib/R/library/arrow/libs/arrow.so TypeError: resolved is not a function ``` Is there something that I miss ? Thanks GitHub link: https://github.com/apache/arrow/discussions/49121 ---- This is an automatically sent email for [email protected]. To unsubscribe, please send an email to: [email protected]
