Check out the troubleshooting section of the hadoop support - we ran into the 
same thing and tried to update that with some info on how to get around it:
http://wiki.apache.org/cassandra/HadoopSupport#Troubleshooting

On Feb 24, 2012, at 7:20 AM, Patrik Modesto wrote:

> Hi,
> 
> I can see some strange behaviour on my test cluster and in production.
> Both running cassandra 0.8.10. Strange is that when I compile my
> mapreduce job against cassandra-all 0.8.7 everything is ok, but if I
> use higher version I get quite a lots of TimedOutException.
> 
> java.lang.RuntimeException: TimedOutException()
>        at 
> org.apache.cassandra.hadoop.ColumnFamilyRecordReader$RowIterator.maybeInit(ColumnFamilyRecordReader.java:319)
>        at 
> org.apache.cassandra.hadoop.ColumnFamilyRecordReader$RowIterator.computeNext(ColumnFamilyRecordReader.java:333)
>        at 
> org.apache.cassandra.hadoop.ColumnFamilyRecordReader$RowIterator.computeNext(ColumnFamilyRecordReader.java:207)
>        at 
> com.google.common.collect.AbstractIterator.tryToComputeNext(AbstractIterator.java:135)
>        at 
> com.google.common.collect.AbstractIterator.hasNext(AbstractIterator.java:130)
>        at 
> org.apache.cassandra.hadoop.ColumnFamilyRecordReader.nextKeyValue(ColumnFamilyRecordReader.java:163)
>        at 
> org.apache.hadoop.mapred.MapTask$NewTrackingRecordReader.nextKeyValue(MapTask.java:456)
>        at 
> org.apache.hadoop.mapreduce.MapContext.nextKeyValue(MapContext.java:67)
>        at org.apache.hadoop.mapreduce.Mapper.run(Mapper.java:143)
>        at org.apache.hadoop.mapred.MapTask.runNewMapper(MapTask.java:647)
>        at org.apache.hadoop.mapred.MapTask.run(MapTask.java:32
> 
> There is nothing in the cassandra log, the cluster is idle, no one
> else is accessing the cluster.
> 
> There are just few rows, nothing big:
> 
> INFO  mapred.JobClient:     Reduce input groups=14
> INFO  mapred.JobClient:     Combine output records=0
> INFO  mapred.JobClient:     Map input records=544009
> INFO  mapred.JobClient:     Reduce shuffle bytes=33876
> INFO  mapred.JobClient:     Reduce output records=0
> INFO  mapred.JobClient:     Spilled Records=38
> INFO  mapred.JobClient:     Map output bytes=33656
> INFO  mapred.JobClient:     Combine input records=0
> INFO  mapred.JobClient:     Map output records=19
> INFO  mapred.JobClient:     SPLIT_RAW_BYTES=3937
> INFO  mapred.JobClient:     Reduce input records=19
> 
> What could be the problem?
> 
> Regards,
> P.

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