Hi Pei, Thanks for your response even on weekend. We really appreciate it.
You are correct, I am seeing BinaryTextRelation, which lists Knee & Pain relation with location_of relationship. But I was looking for something which could relate A*sprin* with *Knee Pain*. This way in my client program I can map *Asprin* is for *Knee Pain, *not for *Hyperlipidemia.* * * I hope you got what I am looking for. Please let me know if you need more information. Thank you for your time and help. Thank you, Giri On Sun, Apr 21, 2013 at 3:58 PM, Chen, Pei <[email protected]>wrote: > Hi Giri, > If you run the sample desc pipeline from the ctakes-relation-extractor > project, it should create a list of BinaryTextRelations with > Entity/EventMention as arguments (with an example like "pain in the knee", > it should should pick up a location_of relationship) > I can send you the exact details if you need tomorrow once I have access > to a PC. > HTH. > > Sent from my iPhone > > On Apr 21, 2013, at 11:57 AM, "giri vara prasad nambari" < > [email protected]<mailto:[email protected]>> wrote: > > Hi, > > I ran "RelationExtractorAggregate" on the example text provided in ctakes > user-guide in CVD as well as my sample java client. > > I am not seeing either "Location_of " of "Degree_of" attributes in > results. Am I missing something? > > Do I need to relation-extractor after ClinicalPipeline? If so, how could I > simulate this flow in CVD? > > Any input would be appreciated. > > Thanks for your time and help. > > Thank you, > Giri > > > On Fri, Apr 19, 2013 at 3:58 PM, giri vara prasad nambari < > [email protected]<mailto:[email protected]>> wrote: > Thanks Pie! I will check this tonight. > > I heard there is lock down over there in Boston. Be safe. > > Thank you, > Giri > > > On Fri, Apr 19, 2013 at 3:49 PM, Chen, Pei <[email protected] > <mailto:[email protected]>> wrote: > Hi Giri, > 1) There is currently a ctakes-relation-extractor component that extracts > Location_of and Degree_of between UMLS concepts. > 2) For all of the available types, check out the type system UML: > > http://ctakes.apache.org/user-faqs.html#what-are-the-available-attributes-types-in-ctakes > > ________________________________ > From: giri vara prasad nambari [[email protected]<mailto: > [email protected]>] > Sent: Friday, April 19, 2013 12:50 AM > To: [email protected]<mailto:[email protected]>; user > Subject: How to relate concept types? > > Hi Team, > > How are you? > > 1) While continuing with experiments I am stuck at relating concepts from > annotated text , example, relating PROBLEM and TREATMENT concepts. > > For example, while running the example text we have in ctakes user guide, > we are getting > Hyperlipidemia as PROBLEM > Pain (Knee) also as PROBLEM > and > ASPRIN as TRETMENT > > Now, I am struggling to figure out how to associate ASPRIN to KNEE PAIN? > while extracting Features. Any other annotators (or) AE available for this > purpose? > > Any inputs would be really helpful. > > 2) Is there any documentation which lists all possible CONCEPT TYPE > values? > > Thanks for your time and help. > > Thank you, > Giri > > >
