Matt and Pei,
 
>From now on I'll defer to what you guys say (for the most part ;-) instead of 
>trying to force things that just aren't meant to be so I'm striking down the 
>question from this post.  
 
I explored the code associated with rendering the concepts and assertion 
annotations and was making progress on modifying it to force assertion 
annotations (to display at the top level) essentially hacking my way through it 
till I hit a major wall.   I believe it's the setAssociatedText(or maybe it's 
the AssertionType) method that requires concept in the return method and there 
were issues when trying to cast it as a string to get it to render which 
spawned other errors.    Bottom line is better to leave well enough alone and 
just focus on what's available downstream (in entity/event mentions) as you 
guys suggested.   
 
I do appreciate the responses.
 
Thanks.
 
Regards,
Paula
 
From: [email protected]
To: [email protected]
Subject: RE: cTakes Assertion Component Question
Date: Fri, 15 Nov 2013 12:13:43 -0500







HI Matt,
 
Thanks for the response.    I was writing a response to Pei when your email 
came in.   Yes, I see the properties in Event/Entity Mention that you stated:  
Polarity, Uncertainty, Conditional, Generic, and Subject.     However, please 
see attachment.....the Assertion component gives the appearance like it should 
be able to create annotations since it's stated but has [0].  The Concept 
component creates annotations, in this case it's listed with [4] pertaining to 
my sample text.  
 
Even if the Assertion and Concept annotations are used internally in the 
assertion system, The Concept annotations creates new annotations objects with 
the two features of interest:  conceptType and conceptText.  I also see that 
Assertion has these features defined for them as well (by looking directly in 
Assertion.java):  assertionType and assertionText.     As you can see in the 
screen capture, I get results for Concept for conceptType and conceptText.   I 
would like Assertion to follow suit and display annotations as Concept does.    
  Regards,Paula  From: [email protected]
To: [email protected]
Subject: Re: cTakes Assertion Component Question
Date: Fri, 15 Nov 2013 16:29:03 +0000






Hi Paula,



The Assertion and Concept annotations are used internally in the assertion 
system.  



The assertion component doesn't create any new annotation objects, rather it 
updates properties of the IdentifiedAnnotations objects (EventMention and 
EntityMention annotations).



In particular, you should look at the following properties:

PolarityUncertaintyConditionalGenericSubject
Matt

                                                                                
  

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