Hi Pan,
Could you attach the pipeline configuration (is it
DefaultAggregateUMLSPlaintextprocessor.xml)?
In particular,
Do you have the DrugNER (for the drug signatures) in your pipeline?
<delegateAnalysisEngine key="DrugMentionAnnotator">
<import
location="../../../ctakes-drug-ner/desc/analysis_engine/DrugMentionAnnotator.xml"/>
</delegateAnalysisEngine>
...
<node>DictionaryLookupAnnotator</node>
<node>DrugMentionAnnotator</node>
...
--Pei
From: Pan Teng [mailto:[email protected]]
Sent: Monday, December 16, 2013 3:43 PM
To: [email protected]
Subject: Medication Mention
Hi cTAKES community,
I saw in one of the slides from your presentation saying that, query like "The
patient took aspirin 325 mg for knee pain." will have annotation like
<edu.mayo.bmi.uima.core.type.refsem.MedicationStrength
value number = "325" unit = "mg">
<edu.mayo.bmi.uima.core.type.refsem.MedicationStatusChange
value="noChange" />
But when I ran this, I only got
medicationStrength = <null>, medicationStatusChange = <null>
Is the annotation for medication working properly?
I'm not sure what's wrong here. Any clues?
Best,
Pan
