Ironically enough, it just started working. Let me wait until I get the ULMS license privelledges and then see if it works. Thank you so much for all of your help guys.Very welcoming community - glad to be a member. If anyone needs statistics or machine learning help let me know!
Josh On Sun, Dec 22, 2013 at 9:04 PM, Karthik Sarma <[email protected]> wrote: > Josh, you should be able to add -Xms500m -Xmx4000m to the command line > arguments in the run scripts in order to increase the heap size available > for your JRE. If that doesn't work, it is likely something else is wrong. > If you could post in more detail what exactly you are trying to do, that > would be helpful > > > > > > -- > Karthik Sarma > UCLA Medical Scientist Training Program Class of 20?? > Member, UCLA Medical Imaging & Informatics Lab > Member, CA Delegation to the House of Delegates of the American Medical > Association > [email protected] > gchat: [email protected] > linkedin: www.linkedin.com/in/ksarma > > > On Sun, Dec 22, 2013 at 5:26 PM, digital paula <[email protected]>wrote: > >> Josh, >> >> ULMS also uses a lot of memory especially since it contains the full >> vocabulary for annotating in terms of recognizing diseases, anatomy, meds, >> etc. Though, to get the plaintext processor (without ULMS) still requires >> a lot of memory because of all the components it calls just like the >> aggregate processor using ULMS. >> >> I'm using Eclipse but do try what the other folks recommended but if for >> whatever reason nothing works use this as a last resort. Gamers do this to >> increase their memory for JRE. Create an environmental variable(1st line >> below) with value(2nd line below) : >> >> _JAVA_OPTIONS >> >> -Xms500m -Xmx4000m >> >> Regards, >> Paula >> >> ------------------------------ >> From: [email protected] >> Date: Sun, 22 Dec 2013 06:44:04 -0500 >> Subject: Re: Help running AggregatePlaintextProcessor >> >> To: [email protected] >> >> Hi Paula, >> >> Thank you SO much for your response. I have been literally trying to fix >> this for 5+ hours. I don't have permissions to use the ULMS version yet so >> I am trying to make this work. Unfortunately I am not using eclipse so his >> method for increasing does not make sense. Can you expand? Were you in >> eclipse? Previously, i googled how to increase Heapsize, and changed >> settings in my java application. If I go to configure Java Control Panel I >> added the following runtime parameter: >> -Xmx2048m for both user and system... to no avail. >> >> I sincerely appreciate your help. Are you telling me that when I get the >> ULMS version it won't use as much memory? >> >> THanks, >> Josh >> >> >> >> >> On Sun, Dec 22, 2013 at 2:36 AM, digital paula >> <[email protected]>wrote: >> >> Hi Josh, >> >> Yes, I had the same problem but my friend Samir helped me out. :-) You >> have to increase your JRE memory. Please see my post and Samir's from >> October, I think it was early October. >> >> Actually the ULMS version of the AggregatePlaintextProcessor is more >> important. >> >> Regards, >> Paula >> >> ------------------------------ >> From: [email protected] >> Date: Sat, 21 Dec 2013 19:11:52 -0500 >> Subject: Help running AggregatePlaintextProcessor >> To: [email protected] >> >> >> Hello everyone, >> >> I am trying to use cTAKES (just downloaded it) and when trying to load >> the analysis engine AE *AggregatePlaintextProcessor* (per this link: >> https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1+User+Install+Guide#cTAKES3.1UserInstallGuide-Prerequisites >> ) >> >> I get this error: >> Loading model: >> ................................ >> scope model: >> /C:/apache-ctakes-3.1.0/resources/org/apache/ctakes/assertion/models/scope.model >> Exception in thread "AWT-EventQueue-0" java.lang.OutOfMemoryError: GC >> overhead limit exceeded >> >> I am on Windows 8, 8gb of ram. It appears that other AE work.. but I know >> AggregatePlaintextProcessor is the most important one. >> >> Thank you so much for any help! This is very important to me. Please >> feel free to respond to me directly at my email address: >> [email protected] >> >> Josh >> >> >> >> -- >> Joshua S. Weiner >> [email protected] >> 201.638.0047 >> >> >> >> >> -- >> Joshua S. Weiner >> [email protected] >> 201.638.0047 >> > > -- Joshua S. Weiner [email protected] 201.638.0047
