Hi, I have some clarifications. I am able to run the tagger using UMLS for identifying disease, drugs, signs/symptoms. I am afraid that I am not able to tag lot of good information. For eg: Let me explain with an example. I tried documents that contains clinical test with lot of medical entities in it. But I am not able to identify the entities such as IMMUNOGLOBULIN, TRANSGLUTAMINASE which should be tagged as protein or atleast chemical class. I tried the same document for other biomedical text mining libraries such as ABNER. I am able to tag them as protein. Am I missing something here ? Can you please suggest some modules for finding genes, proteins, orgranism. What are the limitation of cTakes. Looking forward for someone to clarify this.
Regards, Prasanna.
