Hi, Can you please suggest me some ideas how can we go for UMLS concept id to ICD10 tagging ? For eg: when I run the UMLS module for the disease "Diabetic nephropathy", I am getting the CUI id as "C0011881" for Tui T047. How can I match the ICD10 tagging for this ? If someone can give me ideas for simple mapping from then I can for it. Also I get SNOMED code for "diabetic nepropathy" I searched for both query in SNOMED CT browser. But I also need to relate with ICD10 tagging. I am new to this tagging. So I need some help on this. Thanks for response.
Regards, Prasanna. On Sat, Apr 12, 2014 at 11:51 AM, Savova, Guergana < [email protected]> wrote: > cTAKES uses UMLS codes that are subset to sources like SNOMED CT and > RxNORM augmented with synonyms. If you are interested in ICD-9 codes, you > might be able to use the UMLS CUI to map to the ICD-9 code. > > > > Hope this helps. > > --Guergana > > > > *From:* Prasanna Bala [mailto:[email protected]] > *Sent:* Friday, April 11, 2014 3:41 AM > *To:* [email protected] > *Subject:* Re: ICD9 code resolving.. > > > > Hi, > > I was reading a mail from the cTakes user group the other day where it was > mentioned that cTakes uses ICD9 code internally. But then write the output > for SNOMED CT code. I have certain entities for which I need to find out > ICD9/10 codes. For eg: Consider the disease "DIABETES MELLITUS". There are > so many ICD codes present for this illness. I need to narrow down to fewer > ICD codes. Is it possible to automate this type of problem using cTakes. I > also found that SNOMED CT code can be mapped to ICD codes. How reliable is > this ? Also I have implemented another version of lookup table for matching > UMLS semantic types using trie structure. I found this to be pretty fast > although I implemented in python. I would like to contribute this to cTakes > because this can improve the efficiency of the lookup process too. Please > let me know your thoughts. Thanks for response. > > Regards, > Prasanna > > > > On Thu, Apr 10, 2014 at 4:02 PM, Miller, Timothy < > [email protected]> wrote: > > Prasanna, > I'm not aware of ICD9 codes being used within cTAKES. Is there a specific > piece of code you're referencing when you say: > > > "I found that ICD9 code is used internally by the cTakes for finding the > entities." > > Tim > > ------------------------------ > > *From:* Prasanna Bala [[email protected]] > *Sent:* Thursday, April 10, 2014 2:15 AM > *To:* [email protected] > *Subject:* ICD9 code resolving.. > > Hi, > > I have some clarifications regarding ICD9 code. I found that cTakes uses > different mapping technique to resolve the entities from the diagnosis. I > want to know how they are doing this for ICD9. When I run the code, in the > output it is showing the various tagged entities with SNOMED CT code. But > my question, why I am not able to access the ICD9 code. I found that ICD9 > code is used internally by the cTakes for finding the entities. How can I > find the IC9 code for the entities ? Can you please tell me if there is any > module which is using ICD9 code in the cTakes. I need to pipeline the ICD9 > code also separately. > > Regards, > > Prasanna > > >
