Thanks again. Would you happen to have a template of CAS consumer which I can customize.
What I need is to structure a template so that all medications and downstream concepts, all disease, all anatomical site mentions are grouped together for a particular processed record. Anir On Wed, May 7, 2014 at 12:15 AM, Masanz, James J. <[email protected]>wrote: > The XXXXXXXMention annotations such DiseaseDisorderMention, > SignSymptomMention correspond to the CEMs. > > > > You could customize a CAS Consumer to just output the annotations you are > interested in, plus the related annotation such as OntologyConcept and > UmlsConcept and the MedicationXXXX annotations like MedicationDosage and > MedicationDosageModifier. > > > > Perhaps we are thinking of different things when we refer to CEMs. What > do you mean by CEMs or where did you hear about CEMs? > > > > There is also a data normalization pipeline that takes cTAKES output and > stores it into a database > > http://informatics.mayo.edu/sharp/index.php/Data_Normalization > > > > But I suspect that is more involved than what you are looking for and I’m > not sure if that output is quite what you are looking for either > > > > > > *From:* Anirban Chakraborti [mailto:[email protected]] > *Sent:* Tuesday, May 06, 2014 5:30 AM > *To:* [email protected] > *Subject:* CEM Template Filler > > > > Hi, > > > > I ran Aggregatemplatefiller.xml on a text file and got the attached output > in XMI format. How do I convert the same into CEMs supported by Ctakes. > > > > The output by itself is very bulky to read. > > > > Anir >
