Also check out the main class in: https://svn.apache.org/repos/asf/ctakes/trunk/ctakes-clinical-pipeline/src/main/java/org/apache/ctakes/clinicalpipeline/ClinicalPipelineFactory.java It uses uimaFIT style to programmatically wire up a pipeline and one can also use uimaFIT to access the Annotations (TypeSystem).
--Pei On Wed, Jun 18, 2014 at 10:16 AM, vijay garla <[email protected]> wrote: > To Annotate: > If you have a CPE, and all the components in your pipeline are threadsafe > (i.e. drop LVG from your pipeline), you can increase the threads in the cpe > config > You can use this class: org.apache.ctakes.ytex.tools.RunCPE to run a cpe > from the command line/script > > Alternatively, run multiple CPE's in parallel (they need to be processing > different subsets of the corpus) > > To extract annotations: > Add the YTEX DBConsumer to store the annotations in a database (see > https://cwiki.apache.org/confluence/display/CTAKES/cTAKES+3.1.2+-+YTEX+DBConsumer > ) > Make sure you configure 'types to ignore' - you don't want to store > annotations for punctuation. > > You can add the DBConsumer to any pipeline/CPE - you don't need any other > YTEX components (however, you do have to set up a database). > > > > > On Wed, Jun 18, 2014 at 4:56 AM, Richard Eckart de Castilho < > [email protected]> wrote: > >> A Groovy script has been mentioned on the developers list that >> illustrates how to use uimaFIT to compose and run a cTAKES pipeline. [1] >> >> I do not know if these scripts are only in SVN or if they are (planned >> to) be part of a release or of some documentation. >> >> Cheers, >> >> -- Richard >> >> [1] >> http://mail-archives.apache.org/mod_mbox/ctakes-dev/201312.mbox/%3c996fc801c05df64a84246a106facacd021a...@msgpexcha08a.mfad.mfroot.org%3E >> >> On 18.06.2014, at 07:33, Abhishek Raj <[email protected]> wrote: >> >> > Hello. I have been looking for a way to run ctakes programatically to >> annotate large number of documents and extract those annotations. I haven't >> come across any docs so far which explains how to do that. If someone could >> throw some light on this issue, it'd be great. Thanks! :) >> >> >
