Hi Abhishek ,
Thanks for your reply!
I think the one you mentioned is not the automated way, for that you need to
run .bat file, provide input path and all manually.
I want to automate this thing.
I am thinking can I write a java code which will call CVD/ CPE(any one of them)
using collection reader or something.
I am trying like this:
// specify the input directory-
CollectionReader collectionReader =
CollectionReaderFactory.createCollectionReaderFromPath(
"desc/ctakes-core/desc/collection_reader/FilesInDirectoryCollectionReader.xml",
FilesInDirectoryCollectionReader.PARAM_INPUTDIR,
"resources1")
// make sure the model parameters match those used for
training
AnalysisEngine relationExtractor =
AnalysisEngineFactory.createAnalysisEngineFromPath(
"C:/apache-ctakes-3.1.1/desc/ctakes-clinical-pipeline/desc/analysis_engine/AggregatePlaintextUMLSProcessor.xml");
AnalysisEngine xWriter = AnalysisEngineFactory.createPrimitive(
XWriter.class,
XWriter.PARAM_OUTPUT_DIRECTORY_NAME,
"output");
SimplePipeline.runPipeline(collectionReader, relationExtractor, xWriter);
Is anyone tried out such thing?
Thanks,
Kirti
From: Abhishek Raj [mailto:[email protected]]
Sent: Tuesday, July 22, 2014 6:25 PM
To: [email protected]
Subject: Re: Need help to build java pipeline to call ctakes
*Run it with.
Assuming of course, you're working on Linux. If you're on windows, use the .bat
file to run CPE. When running CPE use the test_plaintext.xml descriptor with
suitable processing engine to process large number of documents. Hope that
helps. :)
Abhishek Raj,
Bachelor of Technology,3rd year,
Department of Computer Science and Engineering,
Indian Institute of Technology Ropar.
On Jul 22, 2014 5:05 PM, "Kirti Bhamare"
<[email protected]<mailto:[email protected]>> wrote:
Hi all,
I am new to apache ctakes. I am able to run clinical pipeline using CVD. I want
to automate this process.
I want to build a java pipeline which will call analysis engine, process the
input string(Input Text may be medical note) and generate the XMI.
I searched a lot but not able to figure out how to use the API’s?
Can anyone help me with this?
Thanks in advance!
Regards,
Kirti
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