Hi all,
I am new to ctakes and am trying to get up and running with using my UMLS
credentials. I have modified the runctakesCVD.sh and runctakesCPE.sh files
(see copied text below). I don't think the syntax is correct and I have
tried many different options. I uncommented the code and substituted my
real username and passwords. However when I run ctakes it does not appear
to be using my credentials. Is there anyway to confirm that I am
successfully authenticated using my UMLS credentials? Is the syntax
incorrect? Thank you
James Foster
...
# Requires JAVA JDK 1.6+
# If you plan to use the UMLS Resources, set/export env variables
# export ctakes.umlsuser=jamesfoster, export ctakes.umlspw=Phantom9
# or add the properties
*-Dctakes.umlsuser=jamesfoster -Dctakes.umlspw=******
PRG="$0"
while [ -h "$PRG" ]; do
ls=`ls -ld "$PRG"`
link=`expr "$ls" : '.*-> \(.*\)$'`
if expr "$link" : '/.*' > /dev/null; then
PRG="$link"
else
PRG=`dirname "$PRG"`/"$link"
fi
done
PRGDIR=`dirname "$PRG"`
...
