James, This was the problem. It's resolved now. Thank you a lot for your help.
On Mon, Nov 10, 2014 at 4:04 PM, Masanz, James J. <[email protected]> wrote: > Within the output, within MedicationMention there is > org.apache.ctakes.typesystem.type.refsem.OntologyConcept > > Within that, there is an attribute called "code" > If you see code = "C7777777", then you are using a small sample dictionary > that is included in cTAKES only for very basic illustration purposes, and you > should try using AggregatePlainTextUMLSProcessor.xml instead of > AggregatePlainTextProcessor.xml > > If that is not the problem, please tell us if you have checked cTAKES out > from SVN or if you are have downloaded and are using the binary or source > distribution, and which release (such as 3.1.1). > > Regards, > James > > > -----Original Message----- > From: Mansour Al Akeel [mailto:[email protected]] > Sent: Saturday, November 08, 2014 2:03 AM > To: user > Subject: MedicationMention for Acetaminophen > > I am trying to experiment with the annotations for drugs using > AggregatePlainTextProcessor.xml > > I copied some text from the web > http://www.babycenter.com/404_whats-the-difference-between-acetaminophen-and-ibuprofen_12377.bc > to test it. > > > The following text: > > Acetaminophen and ibuprofen are both good medicines, and both provide > the same basic relief from fever and pain, even though they have > different chemical structures and side effects. Ibuprofen is > recommended only for kids 6 months and older. > > > results in ibuprofen being recognized but not Acetaminophen. > > I checked user FAQ http://ctakes.apache.org/user-faqs.html, and found : > > Why doesn't my UMLS term get indentified by the system but it exists > in SNOMEDCT/RxNorm? > > The Dictionary Lookup that you are using filters out terms that don't > have tui codes registered in the > resources/org/apache/ctakes/dictionary/lookup/LookupDesc_Db.xml file. > Edit that file and add "{TUI}" to the value list for > "{semanticGroup}Tuis" property as below: For Example: > > < property key="semanticGroupTuis" value="{TUIS}" /> > > within < lookupConsumer > className="org.apache.ctakes.dictionary.lookup.ae.UmlsToSnomedDbConsumerImpl" >> > > Unforetunately there was no such property anywhere in the file. > > A similar thread > http://mail-archives.apache.org/mod_mbox/ctakes-dev/201406.mbox/%3c162a581621c64333b7ddc4ef95813...@bl2pr08mb516.namprd08.prod.outlook.com%3E > > suggested replacing > > <lookupConsumer > className="org.apache.ctakes.dictionary.lookup.ae.OrangeBookFilterConsumerImpl"> > > with > > <lookupConsumer > className="org.apache.ctakes.dictionary.lookup.ae.NamedEntityLookupConsumerImpl"> > > in the resources/org/apache/ctakes/dictionary/lookup/LookupDesc.xml > > Again, no luck. > > Any idea ?
