The installation procedure is over now and it seems it went well. If you need I can provide the installation logs. I have some questions about the semantic similarity feature. I have tried the example provided in the guide and It worked. I tried with other cui for example virus(C0042776) and aids(C0001175) and it gave me a similarity of 0.0... that sounded strange. I thought maybe because I was using a small part of umls so I tried with the option "-Dytex.conceptGraphName=umls" but I got the same result. Do I have to build my own concept graph and corups information content as described in the guide? if yes how can I do that for the whole umls database? Do you think the final graph would be too big?
Best regards, Giovanni 2014-11-24 16:49 GMT+01:00 Giovanni Di Santo <[email protected]>: > Hi Vijay, > Thanks for your reply. > I added that file as you suggested. The installation process has passed > that point and now... I suppose... It's filling the database. I have been > running it for 2 hours so far... I suppose it's taking a lot of time cause > it's creating a dictionary lookup table for my local umls installation. > I'll let you know when the installation is over. > > Best regards > > Giovanni > > 2014-11-24 13:45 GMT+01:00 vijay garla <[email protected]>: > >> Hi Giovanni, >> >> I think I found a bug in the offending class. Can you copy the attached >> file to this directory: >> >> YTEX_HOME\resources\org\apache\ctakes\ytex\ >> >> And retry? >> >> Thanks! >> >> VJ >> >> >> On Thu, Nov 20, 2014 at 4:16 PM, Giovanni Di Santo < >> [email protected]> wrote: >> >>> Hi, >>> I have tried to install YTEX in another machine and the same exception >>> is thrown during the installation. The output is slightly different: >>> http://pastebin.com/gVhSFYKp. >>> I suppose I make some mistakes during the installation process. >>> When in the ytes installation guide is written to copy "over" my >>> installation I use a command like "cp -R /directory_fo_copy/* /ctakes_home". >>> Is there any already ready ytex version that I can download and use for >>> Linux? >>> >>> I don't really now what could be the problem and I need to test the >>> Semantic Similarity feature. >>> >>> Best regards >>> >>> Giovanni >>> >>> 2014-11-12 0:05 GMT+01:00 Kim Ebert <[email protected]>: >>> >>>> Adding developer mailing list, as I'm not sure what is causing your >>>> error. >>>> >>>> Kim Ebert >>>> 1.801.669.7342 >>>> Perfect Search Corp >>>> http://www.perfectsearchcorp.com/ >>>> >>>> On 10/29/2014 11:57 AM, Giovanni Di Santo wrote: >>>> > Hi, >>>> > I'm trying to install ytex. I've followed the instructions provided >>>> > here >>>> > https://cwiki.apache.org/confluence/display/CTAKES/YTEX+Installation >>>> > but the installing process stops and raises an Excpetion >>>> > java.lang.ExceptionInInitializerError. >>>> > More precisely I receive that output: http://pastebin.com/PrWyBxhx . >>>> > I'm using cTakes 3.2 and the I've installed locally on a mysql db the >>>> > umls 2014AA version. >>>> > >>>> > Best regards, >>>> > >>>> > Giovanni >>>> >>>> >>> >> >
