Thanks, Kim! That at least gives me somewhere to go. Hopefully it gets resolved soon.
- Dave On Wed, Nov 26, 2014 at 3:06 PM, Kim Ebert <[email protected]> wrote: > David, > > See the following ticket. > > https://issues.apache.org/jira/browse/CTAKES-307 > > Although, looking at the ticket itself seems to indicate that we only > fixed the build by extracting the contents of the jar file, and using that > in the classpath instead of the jar. > > > [image: IMAT Solutions] <http://imatsolutions.com> > Kim Ebert > Software Engineer > [image: Office:] 801.669.7342 > [email protected] <[email protected]> > On 11/26/2014 02:03 PM, Kim Ebert wrote: > > Hi David, > > I know that a few people have run into this issue. If it runs successfully > in one environment vs the other, you may want to check the ordering of the > libraries and resource directory in the classpath. > > This can be solved by using the resources outside of the jar file. I'm > hoping this issue ends up being resolved at some point. I believe Pei Chen > has made a few fixes, but I don't think that was in the 3.2.0 release. > > Thanks, > > [image: IMAT Solutions] <http://imatsolutions.com> > Kim Ebert > Software Engineer > [image: Office:] 801.669.7342 > [email protected] <[email protected]> > On 11/26/2014 01:31 PM, David Kincaid wrote: > > Does anyone know what is causing this exception: > > java.lang.IllegalArgumentException: URI is not hierarchical > at java.io.File.<init>(File.java:418) > at > org.apache.ctakes.lvg.resource.LvgCmdApiResourceImpl.load(LvgCmdApiResourceImpl.java:65) > > I'm getting that when I try to run the clinical pipeline inside of > IntelliJ using a TestNG unit test. I can run the pipeline from CPE and from > a Clojure REPL no problem, so it must be something in IntelliJ setting > something up wrong. > > When I step through a debugger the uri it's trying to use is: > > > jar:file:/home/davek/.m2/repository/org/apache/ctakes/ctakes-lvg-res/3.2.0/ctakes-lvg-res-3.2.0.jar!/org/apache/ctakes/lvg/data/config/lvg.properties > > which is clearly not a valid file path. > > I came across Jira ticket CTAKES-314 > <https://issues.apache.org/jira/browse/CTAKES-314> when it's mentioned > one time without any discussion. I haven't found any other references to it > yet though. > > Thanks, > > Dave > > > >
