Thanks Bruce, that’s probably my problem. I’m referencing the cTAKES dependencies in my pom and spring boot makes 1 big fat jar file. Is there some setting I can override somewhere on cTAKES to tell it to go look in an external folder for the dictionary? I tried not bundling cTAKES and attempting to reference my cTAKES installation but I kept getting error messages from other cTAKES components about “URI is not hierarchical”.
> On Jun 25, 2015, at 10:10 AM, Bruce Tietjen > <[email protected]> wrote: > > Jeff, > > If your process is working except that it takes 14 minutes, then I suggest > that you check to see if cTakes is reading the lookup dictionary files from > .jar files. > > cTakes can run with the dictionary resources in .jar files, but it will be > very slow. > > > <http://imatsolutions.com/> Bruce Tietjen > Senior Software Engineer > 801.634.1547 > [email protected] <mailto:[email protected]> > > On Thu, Jun 25, 2015 at 7:56 AM, Jeff Headley <[email protected] > <mailto:[email protected]>> wrote: > I can tell you what I am trying to do, but that is only with limited success. > I am very new to cTAKES. I just put together a simple Spring Boot app and > defined the ctakes dependencies in the pom.xml. Then I pass in a filename on > the command line to the app and open it and pass the text on to cTAKES. I’m > doing something wrong somewhere though because it takes 14 minutes to process > the tiny 1-line text file (sits on one of the UMLS annotators for a long time > as I recall) whereas I can put the same text in the CVD and get results back > immediately. > >> On Jun 25, 2015, at 6:19 AM, Sai Anuroop <[email protected] >> <mailto:[email protected]>> wrote: >> >> Hi All, >> @Lance,Jeff:Thanks a lot for your posts.Basically I want to run cTAKES in >> background by choosing File Collection Reader,AE and CAS Consumer using java >> code and produce XML output.Presently I have installed the developer version >> of cTAKES,So can you please tell me where to write above java code and how >> to run it. >> >> Regards, >> Vetsa Sai Anuroop >> > >
