This is great - thanks, James. Are the commands in the hackphlet meant to be run in a bash shell? They don't seem to work on the windows command line.
@Hephaestus Studio - Thanks for the tip here. Do you have experience setting up this package? As such a rookie I'm running into a lot of technical difficulties - specifically he says to run the mvn package, which doesn't seem to appear in the repository. Additionally, does anyone have thoughts on why the Aggregate Plaintext UMLS processor would not provide negation or concept codes? I've tried it with both the CVD and CPE. Apologies for the barrage of questions, but I appreciate everyone's support here. On Thu, Mar 9, 2017 at 12:41 PM, James Masanz <[email protected]> wrote: > > I've posted the pamphlet/manual to the Wiki for 3.2.2. > https://cwiki.apache.org/confluence/download/attachments/ > 44302415/cTAKES.Hackphlet.3.2.2.pdf > > > On Thu, Mar 9, 2017 at 11:50 AM, James Masanz <[email protected]> > wrote: > >> I'm making some minor changes to the pamphlet Guergana mentioned and will >> send it out or post it later today. >> >> On Wed, Mar 8, 2017 at 5:03 PM, Savova, Guergana < >> [email protected]> wrote: >> >>> Yes, we have a guide (aka pamphlet) with a description of the cTAKES >>> basics. We will be distributing it with the 4.0 release targeted at the end >>> of the month. >>> >>> >>> >>> Sean Finan might be able to distribute the pamphlet now… >>> >>> --Guergana >>> >>> >>> >>> >>> >>> *From:* Kevin B. Cohen [mailto:[email protected]] >>> *Sent:* Wednesday, March 8, 2017 4:27 PM >>> *To:* [email protected] >>> *Subject:* Re: Named entity recognition >>> >>> >>> >>> Alden, if you find such a beginner's guide and could distribute its >>> whereabouts to the rest of us, it would be great. >>> >>> >>> >>> >>> >>> Kevin >>> >>> >>> >>> On Tue, Mar 7, 2017 at 6:39 PM, Alden Gordon <[email protected]> >>> wrote: >>> >>> Does anyone have a beginners guide to applying cTAKES named entity >>> recognition to a corpus? >>> >>> >>> >>> I have used the aggregate plain text processor with the collection >>> process engine on my data (the text of a PCP - specialist curbside >>> consult), but it seems to only capture capitalization and part of speech. I >>> would like to capture negation and assign relevant words to SNOMED >>> concepts. >>> >>> >>> >>> Thank you in advance for any general guidance. >>> >>> >>> >>> Additionally, if anyone has any advice on using cTAKES with python, I >>> would appreciate the help >>> >>> >>> >>> Best, >>> >>> Alden >>> >>> >>> >>> -- >>> >>> Alden Gordon >>> >>> Analytics Lead | 860.402.6572 <(860)%20402-6572> | [email protected] >>> <[email protected]> >>> >>> Visit Care Without Constraints >>> <https://urldefense.proofpoint.com/v2/url?u=https-3A__www.linkedin.com_company_care-2Dwithout-2Dconstraints&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=OZ0N_GegzE8gDXxlcpUKEvrV1iAtsotQO7Z3Ot-D8JE&s=CJVDbKQaW1d7C5KK1F35DE_m0isU_nHdg1qEF1sK2UQ&e=> >>> to learn how eConsults are removing barriers to care. >>> >>> >>> >>> >>> >>> -- >>> >>> Kevin Bretonnel Cohen, PhD >>> Director, Biomedical Text Mining Group >>> Computational Bioscience Program, U. Colorado School of Medicine >>> >>> Chair in Natural Language Processing for the Biomedical Domain >>> >>> Université Paris-Saclay, LIMSI-CNRS >>> >>> 303-916-2417 <(303)%20916-2417> >>> http://compbio.ucdenver.edu/Hunter_lab/Cohen >>> <https://urldefense.proofpoint.com/v2/url?u=http-3A__compbio.ucdenver.edu_Hunter-5Flab_Cohen&d=DwMFaQ&c=qS4goWBT7poplM69zy_3xhKwEW14JZMSdioCoppxeFU&r=SeLHlpmrGNnJ9mI2WCgf_wwQk9zL4aIrVmfBoSi-j0kfEcrO4yRGmRCJNAr-rCmP&m=OZ0N_GegzE8gDXxlcpUKEvrV1iAtsotQO7Z3Ot-D8JE&s=cp9w6ACOoIHwOd5QuRWY9fkfKlM6gP1EEoKa52_XDbg&e=> >>> >>> >>> >> > -- Alden Gordon Analytics Lead | 860.402.6572 <(860)%20402-6572> | [email protected] <[email protected]> Visit Care Without Constraints <https://www.linkedin.com/company/care-without-constraints> to learn how eConsults are removing barriers to care.
