Hi Tanmay Look into DrugMentionAnnotator.java source file, you will get some idea as to how to access drug attributes.
Regards Narayan On Wed, Jun 21, 2017 at 4:28 PM, Das, Tanmay <[email protected]> wrote: > Hi Narayan, > > Thanks for your reply ! > > > > I understand now how to extract drug mention annotaion from cas, but the > values are still > > Turing out to be null (I have included DrugMentionAnnotator as well). Any > idea what I have to do ? > > > > Can you give me some idea why the confidence values are 0 all over ?? or > how could I get the right values. > > And what annotator to use to extract labaratory info from the text: > > Hemoglobin 10.6, hematocrit 31.7, white cell count 5.8, platelet 377. > > Magnesium 2.6, glucose 98, BUN 13, creatinine 0.5, sodium 138, potassium > 3.9, > > chloride 103. INR is 1.5. > > {These get annotated as medication} > > > > Thanks again > > -Tanmay > > *From:* Narayan Bhat [mailto:[email protected]] > *Sent:* Wednesday, June 21, 2017 1:32 PM > *To:* [email protected] > *Subject:* Re: Medication attributes, confidence finding problem in ctakes > > > > Hi > > > > Drug mention annotation (MedicationMention.type) captures drug attributes. > > > > Regards > > Narayan > > > > On Wed, Jun 21, 2017 at 1:17 PM, Das, Tanmay <[email protected]> wrote: > > Hi, > > > > Whenever I use the AggrigatePlainTextFastUMLSProcessor.xml, the > confidence of all the > > Identified annotations are 0.0 and none of the drug dosage is annotated. > They just appear > > Separately as numeric Annotations. And the laboratory reports are not > annotated under test/ .. > > But are included in medication. > > > > Does anyone know how to recognize drug attributes and what does the 0.0 > confidence mean ?? > > Is there any annotator for lab report reorganization in cTAKES ?? > > > > > > -TANMAY > > > This e-mail, including attachments, may include confidential and/or > proprietary information, and may be used only by the person or entity > to which it is addressed. If the reader of this e-mail is not the intended > recipient or his or her authorized agent, the reader is hereby notified > that any dissemination, distribution or copying of this e-mail is > prohibited. If you have received this e-mail in error, please notify the > sender by replying to this message and delete this e-mail immediately. > > > > > > -- > > Thanks and Regards > > Narayan L Bhat > > +91 9740237967 > > > This e-mail, including attachments, may include confidential and/or > proprietary information, and may be used only by the person or entity > to which it is addressed. If the reader of this e-mail is not the intended > recipient or his or her authorized agent, the reader is hereby notified > that any dissemination, distribution or copying of this e-mail is > prohibited. If you have received this e-mail in error, please notify the > sender by replying to this message and delete this e-mail immediately. > -- Thanks and Regards Narayan L Bhat +91 9740237967
