Hello, I created a custom Dictionary using Dictionary creator GUI tool and the XML file for it is created in the folder org/apache/ctakes/dictionary/lookup/fast/foobar.xml as mentioned by Mike.
Post this I make required change in UmlsLookupAnnotator.xml file for the “DictionaryDescriptor” attribute. But on running the piper file with Piper-runner tool, the default sno_rx_ab17 file is used. If I use the ‘-l’ option followed with custom dictionary xml path with piper-runner tool, then the custom dictionary is used for UMLS lookup. Can someone please help me in getting the solution Mike suggested ie. modifying “DictionaryDescriptor” attribute, to work ? Regards, From: Desteny Child [mailto:[email protected]] Sent: Friday, December 15, 2017 2:49 PM To: Prakhar Gaur <[email protected]> Cc: [email protected] Subject: Re: cTAKES UMLS ICD10 codes lookup Hi, For example, if you use AggregatePlaintextUMLSProcessor.xml you can update apache-ctakes-4.0.0\desc\ctakes-dictionary-lookup-fast\desc\analysis_engine\UmlsLookupAnnotator.xml and provide there a path to you database for DictionaryDescriptor, in my case this is org/apache/ctakes/dictionary/lookup/fast/icd10.xml Best regards, Mike On Fri, Dec 15, 2017 at 11:08 AM, Prakhar Gaur <[email protected]<mailto:[email protected]>> wrote: Hello Mike, How/Where do you specify what Dictionary that you want to use with CVD with a particular AE ? Regards, From: Desteny Child [mailto:[email protected]<mailto:[email protected]>] Sent: Friday, December 15, 2017 2:34 PM To: [email protected]<mailto:[email protected]> Subject: cTAKES UMLS ICD10 codes lookup Hello, I created a cTAKES custom dictionary from UMLS database with ICD10 codes. Right now I able to analyze the text by for example disease name, like "Asthma" and annotation index will contain the ICD10 code for this match "code = "J45.90". Is it possible to configure cTAKES in order to reverse this process in order to look for ICD10 code appearance in the text instead? Thanks, Mike
