Thanks Gundolf, I tried your suggestion, but it didn't correct my problem. I have something else wrong.
Don On Fri, Jan 19, 2018 at 3:01 PM, Schenk, Gundolf <[email protected]> wrote: > Hi, > > The authentication works for me. > > Don, did you try > > C:\apache-ctakes-4.0.0>bin\runctakesCVD.bat -Dctakes.umlsuser=donflinn > -Dctakes.umlspw="yourpassw@rd" > > Cheers, > Gundolf. > > On 1/19/18, 11:57 AM, "Miller, Timothy" <Timothy.Miller@childrens. > harvard.edu> wrote: > > I'm having trouble loading the url in my browser too. Could be that the > UMLS web service is down. Is there a person at the NLM to contact about > this? > > Tim > > On Fri, 2018-01-19 at 14:45 -0500, Don Flinn wrote: > > I'm new to Ctakes and am attempting to run the example in the Ctakes > > user guide. I did the install as instructed. When I ran > > the runctakesCVD.bat, the CAS Visusl Debugger window popped up but I > > got the following error: > > ... > > 19 Jan 2018 08:15:43 INFO UmlsUserApprover - Checking UMLS Account > > at https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user > > donflinn: > > > > 19 Jan 2018 08:15:44 ERROR UmlsUserApprover - > > java.security.NoSuchAlgorithmException: Error constructing > > implementation (algorithm: Default, provider: SunJSSE, class: > > sun.security.ssl.SSLContextImpl$DefaultSSLContext) > > > > I'm assuming this means that my login to UMLS failed. However, I > > have a UMLS username and password and entered them into both the Java > > commands in the batch files and also as environment variables. I can > > use these to log into UMLS so I know that they are correct. > > > > I'm running Windows 10 and ctakes 4.0.0. > > > > If someone could let me know what I am doing wrong it would be > > greatly appreciated. > > > > The full debug output is below. Note I also tried to parse the text, > > which as expected also failed. I also commented out the echo off in > > the script. > > Don. > > ======================================== output > > ============================= > > C:\apache-ctakes-4.0.0\bin>cd .. > > > > C:\apache-ctakes-4.0.0>bin\runctakesCVD.bat desc\ctakes-clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > > > C:\apache-ctakes-4.0.0>set CURRENT_DIR=C:\apache-ctakes-4.0.0 > > > > C:\apache-ctakes-4.0.0>if not "C:\apache-ctakes-4.0.0" == "" goto > > gotHome > > > > C:\apache-ctakes-4.0.0>if exist "C:\apache-ctakes- > > 4.0.0\bin\runctakesCVD.bat" goto okHome > > > > C:\apache-ctakes-4.0.0>if exist "C:\Program > > Files\Java\jdk1.8.0_144\bin\java.exe" set PATH=C:\Program > > Files\Java\jdk1.8.0_144\bin;C:\ProgramData\Oracle\Java\ > javapath;C:\WI > > NDOWS\system32;C:\WINDOWS;C:\WINDOWS\System32\Wbem;C:\ > WINDOWS\System3 > > 2\WindowsPowerShell\v1.0\;c:\php;C:\Program Files > > (x86)\Subversion\bin;C:\Program > > Files\TortoiseSVN\bin;c:\unixcmds\usr\local\wbin;C:\Program > > Files\nodejs\;C:\maven\bin;c:\program > > files\java\jdk1.8.0_144\bin;c:\program > > files\java\jdk1.8.0_144\lib;C:\Users\don\AppData\Roaming\ > npm;C:\Users > > \don\AppData\Local\Microsoft\WindowsApps;C:\Program > > Files\Java\jdk1.8.0_144\bin;c:\openssl\bin;C:\apache-uima\bin; > > > > C:\apache-ctakes-4.0.0>cd C:\apache-ctakes-4.0.0 > > > > C:\apache-ctakes-4.0.0>IF "desc\ctakes-clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > " == "" GOTO NoParam > > > > C:\apache-ctakes-4.0.0>IF NOT "" == "" GOTO MoreThanOneParam > > > > C:\apache-ctakes-4.0.0>if exist "C:\apache-ctakes-4.0.0\desc\ctakes- > > clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > " ( > > echo CVD will load AE "C:\apache-ctakes-4.0.0\desc\ctakes-clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > " > > java -Dctakes.umlsuser=donflinn -Dctakes.umlspw=threeOne4 -cp > > "C:\apache-ctakes-4.0.0\desc\;C:\apache-ctakes- > > 4.0.0\resources\;C:\apache-ctakes-4.0.0\lib\*" > > -Dlog4j.configuration=file:\C:\apache-ctakes-4.0.0\config\log4j.xml > > -Xms512M -Xmx3g org.apache.uima.tools.cvd.CVD -desc desc\ctakes- > > clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > ) else ( > > echo Unable to find descriptor "desc\ctakes-clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > " > > GOTO NoParam > > ) > > CVD will load AE "C:\apache-ctakes-4.0.0\desc\ctakes-clinical- > > pipeline\desc\analysis_engine\AggregatePlaintextFastUMLSProc > essor.xml > > " > > > > log4j: reset attribute= "false". > > log4j: Threshold ="null". > > log4j: Retreiving an instance of org.apache.log4j.Logger. > > log4j: Setting [ProgressAppender] additivity to [false]. > > log4j: Level value for ProgressAppender is [INFO]. > > log4j: ProgressAppender level set to INFO > > log4j: Class name: [org.apache.log4j.ConsoleAppender] > > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > > log4j: Setting property [conversionPattern] to [%m]. > > log4j: Adding appender named [noEolAppender] to category > > [ProgressAppender]. > > log4j: Retreiving an instance of org.apache.log4j.Logger. > > log4j: Setting [ProgressDone] additivity to [false]. > > log4j: Level value for ProgressDone is [INFO]. > > log4j: ProgressDone level set to INFO > > log4j: Class name: [org.apache.log4j.ConsoleAppender] > > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > > log4j: Setting property [conversionPattern] to [%m%n]. > > log4j: Adding appender named [eolAppender] to category > > [ProgressDone]. > > log4j: Level value for root is [INFO]. > > log4j: root level set to INFO > > log4j: Class name: [org.apache.log4j.ConsoleAppender] > > log4j: Parsing layout of class: "org.apache.log4j.PatternLayout" > > log4j: Setting property [conversionPattern] to [%d{dd MMM yyyy > > HH:mm:ss} %5p %c{1} - %m%n]. > > log4j: Adding appender named [consoleAppender] to category [root]. > > 19 Jan 2018 08:15:42 INFO Chunker - Chunker model file: > > org/apache/ctakes/chunker/models/chunker-model.zip > > 19 Jan 2018 08:15:43 INFO TokenizerAnnotatorPTB - Initializing > > org.apache.ctakes.core.ae.TokenizerAnnotatorPTB > > 19 Jan 2018 08:15:43 INFO ContextDependentTokenizerAnnotator - > > Finite state machines loaded. > > 19 Jan 2018 08:15:43 INFO AbstractJCasTermAnnotator - Using > > dictionary lookup window type: > > org.apache.ctakes.typesystem.type.textspan.Sentence > > 19 Jan 2018 08:15:43 INFO AbstractJCasTermAnnotator - Exclusion > > tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB > > VBD VBG VBN VBP VBZ WDT WP WPS WRB > > 19 Jan 2018 08:15:43 INFO AbstractJCasTermAnnotator - Using minimum > > term text span: 3 > > 19 Jan 2018 08:15:43 INFO AbstractJCasTermAnnotator - Using > > Dictionary Descriptor: > > org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml > > 19 Jan 2018 08:15:43 INFO DictionaryDescriptorParser - Parsing > > dictionary specifications: > > 19 Jan 2018 08:15:43 INFO UmlsUserApprover - Checking UMLS Account > > at https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user > > donflinn: > > > > 19 Jan 2018 08:15:44 ERROR UmlsUserApprover - > > java.security.NoSuchAlgorithmException: Error constructing > > implementation (algorithm: Default, provider: SunJSSE, class: > > sun.security.ssl.SSLContextImpl$DefaultSSLContext) > > 19 Jan 2018 08:28:05 INFO Chunker - Chunker model file: > > org/apache/ctakes/chunker/models/chunker-model.zip > > 19 Jan 2018 08:28:06 INFO TokenizerAnnotatorPTB - Initializing > > org.apache.ctakes.core.ae.TokenizerAnnotatorPTB > > 19 Jan 2018 08:28:06 INFO ContextDependentTokenizerAnnotator - > > Finite state machines loaded. > > 19 Jan 2018 08:28:06 INFO AbstractJCasTermAnnotator - Using > > dictionary lookup window type: > > org.apache.ctakes.typesystem.type.textspan.Sentence > > 19 Jan 2018 08:28:06 INFO AbstractJCasTermAnnotator - Exclusion > > tagset loaded: CC CD DT EX IN LS MD PDT POS PP PP$ PRP PRP$ RP TO VB > > VBD VBG VBN VBP VBZ WDT WP WPS WRB > > 19 Jan 2018 08:28:06 INFO AbstractJCasTermAnnotator - Using minimum > > term text span: 3 > > 19 Jan 2018 08:28:06 INFO AbstractJCasTermAnnotator - Using > > Dictionary Descriptor: > > org/apache/ctakes/dictionary/lookup/fast/sno_rx_16ab.xml > > 19 Jan 2018 08:28:06 INFO DictionaryDescriptorParser - Parsing > > dictionary specifications: > > 19 Jan 2018 08:28:06 INFO UmlsUserApprover - Checking UMLS Account > > at https://uts-ws.nlm.nih.gov/restful/isValidUMLSUser for user > > donflinn: > > > > 19 Jan 2018 08:28:06 ERROR UmlsUserApprover - > > java.security.NoSuchAlgorithmException: Error constructing > > implementation (algorithm: Default, provider: SunJSSE, class: > > sun.security.ssl.SSLContextImpl$DefaultSSLContext) > > > > > >
