Hello Gundolf, I have attached the snapshot of the error which I am getting. Also check my log files, this might help:
10:58:42.492 - 1: org.apache.uima.tools.cvd.MainFrame.handleException(526): SEVERE: Initialization of annotator class "org.apache.ctakes.dictionary. lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: file:/C:/Users/ankit/Desktop/apache-ctakes-4.0.0/desc/ ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml) org.apache.uima.resource.ResourceInitializationException: Initialization of annotator class "org.apache.ctakes.dictionary.lookup2.ae.DefaultJCasTermAnnotator" failed. (Descriptor: file:/C:/Users/ankit/Desktop/apache-ctakes-4.0.0/desc/ ctakes-dictionary-lookup-fast/desc/analysis_engine/UmlsLookupAnnotator.xml) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:271) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initialize(PrimitiveAnalysisEngine_impl.java:170) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) at org.apache.uima.UIMAFramework.produceAnalysisEngine( UIMAFramework.java:407) at org.apache.uima.analysis_engine.asb.impl.ASB_impl. setup(ASB_impl.java:256) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initASB(AggregateAnalysisEngine_impl.java:429) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initializeAggregateAnalysisEngine(AggregateAnalysisEngine_impl.java:373) at org.apache.uima.analysis_engine.impl.AggregateAnalysisEngine_impl. initialize(AggregateAnalysisEngine_impl.java:186) at org.apache.uima.impl.AnalysisEngineFactory_impl.produceResource( AnalysisEngineFactory_impl.java:94) at org.apache.uima.impl.CompositeResourceFactory_impl.produceResource( CompositeResourceFactory_impl.java:62) at org.apache.uima.UIMAFramework.produceResource(UIMAFramework.java:279) at org.apache.uima.UIMAFramework.produceAnalysisEngine( UIMAFramework.java:371) at org.apache.uima.tools.cvd.MainFrame.setupAE(MainFrame.java:1484) at org.apache.uima.tools.cvd.MainFrame.loadAEDescriptor(MainFrame.java:476) at org.apache.uima.tools.cvd.CVD.main(CVD.java:164) Caused by: org.apache.uima.resource.ResourceInitializationException: MESSAGE LOCALIZATION FAILED: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary. UmlsJdbcRareWordDictionary at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:131) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:266) ... 16 more Caused by: org.apache.uima.analysis_engine.annotator.AnnotatorContextException: MESSAGE LOCALIZATION FAILED: Can't find resource for bundle java.util.PropertyResourceBundle, key Could not construct org.apache.ctakes.dictionary.lookup2.dictionary. UmlsJdbcRareWordDictionary at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser. java:199) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser. java:156) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser. java:128) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:129) ... 17 more Caused by: java.lang.reflect.InvocationTargetException at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser. java:196) ... 20 more Caused by: java.sql.SQLException: error in script file line: 1141005 java.lang.OutOfMemoryError: GC overhead limit exceeded at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) at org.hsqldb.jdbc.JDBCUtil.sqlException(Unknown Source) at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(Unknown Source) at java.sql.DriverManager.getConnection(Unknown Source) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72) at org.apache.ctakes.dictionary.lookup2.dictionary. UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:31) ... 25 more Caused by: org.hsqldb.HsqlException: error in script file line: 1141005 java.lang.OutOfMemoryError: GC overhead limit exceeded at org.hsqldb.error.Error.error(Unknown Source) at org.hsqldb.scriptio.ScriptReaderText.readExistingData(Unknown Source) at org.hsqldb.scriptio.ScriptReaderBase.readAll(Unknown Source) at org.hsqldb.persist.Log.processScript(Unknown Source) at org.hsqldb.persist.Log.open(Unknown Source) at org.hsqldb.persist.Logger.open(Unknown Source) at org.hsqldb.Database.reopen(Unknown Source) at org.hsqldb.Database.open(Unknown Source) at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) at org.hsqldb.DatabaseManager.newSession(Unknown Source) ... 34 more Caused by: java.lang.OutOfMemoryError: GC overhead limit exceeded at java.util.Arrays.copyOfRange(Unknown Source) at java.lang.String.<init>(Unknown Source) at java.lang.String.substring(Unknown Source) at org.hsqldb.persist.HsqlDatabaseProperties.isVersion18(Unknown Source) at org.hsqldb.Table.insertFromScript(Unknown Source) at org.hsqldb.scriptio.ScriptReaderText.readExistingData(Unknown Source) at org.hsqldb.scriptio.ScriptReaderBase.readAll(Unknown Source) at org.hsqldb.persist.Log.processScript(Unknown Source) at org.hsqldb.persist.Log.open(Unknown Source) at org.hsqldb.persist.Logger.open(Unknown Source) at org.hsqldb.Database.reopen(Unknown Source) at org.hsqldb.Database.open(Unknown Source) at org.hsqldb.DatabaseManager.getDatabase(Unknown Source) at org.hsqldb.DatabaseManager.newSession(Unknown Source) at org.hsqldb.jdbc.JDBCConnection.<init>(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.getConnection(Unknown Source) at org.hsqldb.jdbc.JDBCDriver.connect(Unknown Source) at java.sql.DriverManager.getConnection(Unknown Source) at java.sql.DriverManager.getConnection(Unknown Source) at org.apache.ctakes.dictionary.lookup2.util.JdbcConnectionFactory. getConnection(JdbcConnectionFactory.java:84) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:91) at org.apache.ctakes.dictionary.lookup2.dictionary. JdbcRareWordDictionary.<init>(JdbcRareWordDictionary.java:72) at org.apache.ctakes.dictionary.lookup2.dictionary. UmlsJdbcRareWordDictionary.<init>(UmlsJdbcRareWordDictionary.java:31) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(Unknown Source) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(Unknown Source) at java.lang.reflect.Constructor.newInstance(Unknown Source) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionary(DictionaryDescriptorParser. java:196) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDictionaries(DictionaryDescriptorParser. java:156) at org.apache.ctakes.dictionary.lookup2.dictionary. DictionaryDescriptorParser.parseDescriptor(DictionaryDescriptorParser. java:128) at org.apache.ctakes.dictionary.lookup2.ae.AbstractJCasTermAnnotator. initialize(AbstractJCasTermAnnotator.java:129) at org.apache.uima.analysis_engine.impl.PrimitiveAnalysisEngine_impl. initializeAnalysisComponent(PrimitiveAnalysisEngine_impl.java:266) -Ankit On Fri, Jun 8, 2018 at 11:24 AM, Schenk, Gundolf <[email protected]> wrote: > Hi Ankit, > > > > I am not sure what is happening. The error message that you posted either > indicates that your pipeline is corrupted and then you need to fix that, or > the error message contains typos and you have an actual problem with > initialization which might be due to missing resources. Please double check > and post the exact error message you are getting. > > > > Cheers, > > Gundolf. > > > > > > *From: *Ankit Bisht <[email protected]> > *Date: *Friday, June 8, 2018 at 08:12 > *To: *"[email protected]" <[email protected]>, "Schenk, > Gundolf" <[email protected]> > *Subject: *Re: Regardng Apache cTakes > > > > Hello Gundolf, > > > > Thanks for replying back. Yes, I follow the cTakes user installation guide. > > I mean I get the error when I run this command to start ctakes CAS > visual debugger : > > bin\runctakesCVD.bat desc\ctakes-clinical-pipeline\desc\analysis_engine\ > AggregatePlaintextFastUMLSProcessor.xml > > > > -Ankit > > > > On Thu, Jun 7, 2018 at 12:01 PM, Schenk, Gundolf <[email protected]> > wrote: > > Hi Ankit, > > > > Have you followed this guide? > > https://cwiki.apache.org/confluence/display/CTAKES/ > cTAKES+4.0+User+Install+Guide > > > > What exactly do you mean by “open it”? > > > > Cheers, > > Gundolf. > > > > > > > > *From: *Ankit Bisht <[email protected]> > *Reply-To: *"[email protected]" <[email protected]> > *Date: *Wednesday, June 6, 2018 at 20:22 > *To: *"[email protected]" <[email protected]> > *Subject: *Regardng Apache cTakes > > > > Hello, > > > > I am trying to use Apache Ctakes. I have installed it but when I am trying > to open it, I am getting an error that org.apache.uima.resource. > resourceinitializationexception: Initialization of annotator class > "org.apached.ctakes.dictionary.lookup2.ae > <https://protect2.fireeye.com/url?k=b97dad412ab8c249.b97d8a5c-3a2f789363131c1e&u=http://dictionary.lookup2.ae> > .DefaultJCastermAnnotaor" failed > > > > > > Regards > > Ankit Bisht > > >
